RNA id: TU170939


Basic Information

Item Value
RNA id TU170939
length 411
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G136025
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16102894 ~ 16103304 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCATAGCCTTCACATCAGTTTTATCAGTTACAATACGTATGTGCTAAATAAGTGTAGCATACTGTatgtggtggggtagcattatatgtgaaaaatgacattgaggcagaagaacttgtattagatcccagtaacggaacagaatctttgtgggtgaaactgttgaacaagagatctggaggattagcggtaggagtgtgttacaggccaccaaactcagatattcagaaagatgctgcattgtacagtgtaatcaggactgcatgtagcaaggatgtggctgttataatgggggatttcaatttcccaaacttagactgggaaagcccagtggggactacagaagcagaaatagaaatggttgagatggtaaatgactgctttctaactcaatttgtcagggaaccaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170591 lncRNA upstream 202273 15879134 ~ 15900621 (+) False G135779
TU170590 lncRNA upstream 223390 15879134 ~ 15879504 (+) True G135779
TU170578 lncRNA upstream 290773 15811913 ~ 15812121 (+) True G135768
TU170447 lncRNA upstream 296241 15802429 ~ 15806653 (+) True G135666
TU170557 lncRNA upstream 413556 15684478 ~ 15689338 (+) True AMCG00012308
TU170940 lncRNA downstream 28527 16131831 ~ 16136715 (+) True AMCG00012324
TU170957 lncRNA downstream 68435 16171739 ~ 16172095 (+) True G136040
TU170969 lncRNA downstream 90671 16193975 ~ 16196114 (+) True G136051
TU171136 lncRNA downstream 434758 16538062 ~ 16539149 (+) True G136177
TU171150 lncRNA downstream 462595 16565899 ~ 16566231 (+) True G136191
AMCG00012321 mRNA upstream 2033 16057853 ~ 16100861 (+) True AMCG00012321
AMCG00012317 mRNA upstream 45791 15987059 ~ 16057103 (+) True AMCG00012317
AMCG00012316 mRNA upstream 118505 15941632 ~ 15984389 (+) True AMCG00012316
AMCG00012313 mRNA upstream 206385 15888698 ~ 15896509 (+) True AMCG00012313
AMCG00012310 mRNA upstream 287180 15764029 ~ 15815714 (+) True AMCG00012310
AMCG00012324 mRNA downstream 1601 16104905 ~ 16142641 (+) False AMCG00012324
AMCG00012320 mRNA downstream 39346 16142650 ~ 16155119 (+) True AMCG00012320
AMCG00012319 mRNA downstream 60964 16164268 ~ 16169716 (+) True AMCG00012319
AMCG00012318 mRNA downstream 73092 16176396 ~ 16183090 (+) True AMCG00012318
AMCG00012325 mRNA downstream 95699 16199003 ~ 16210644 (+) True AMCG00012325
TU170595 other upstream 172046 15911248 ~ 15930848 (+) True G135781
TU170455 other upstream 479013 15119725 ~ 15623881 (+) True G135670
TU170550 other upstream 539058 15559904 ~ 15563836 (+) True G135744
TU170537 other upstream 623345 15452069 ~ 15479549 (+) True AMCG00012302
TU170424 other upstream 1093091 14988298 ~ 15009803 (+) True G135649
TU170961 other downstream 73095 16176399 ~ 16182668 (+) False AMCG00012318
TU171007 other downstream 146944 16250248 ~ 16259332 (+) True G136076
TU171045 other downstream 290395 16393699 ~ 16432813 (+) True AMCG00012338
TU171165 other downstream 540453 16643757 ~ 16648562 (+) True AMCG00012348
TU171182 other downstream 570975 16674279 ~ 16697391 (+) False AMCG00012349

Expression Profile