RNA id: TU170945


Basic Information

Item Value
RNA id TU170945
length 2956
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G136029
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16127696 ~ 16161198 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcatgtttttattacataatacccatatatagactatatttgattttttttcaatagGTTTTTATTCAATAATCCTTTAATAATtcctttaatattttcaaatggatCCCCAAAGCAGAAGTTCCTTAAGAAGCAGTGCACCGATTCAAAACCCAAAAATGCATAGAgaaggacaaagaaaaaaaaaggagagaaacacaaaaacagaagaaaataaaaaagcaacaacagaaGAATAGAAAATGAGAAAGAGCTGAAGTTAACTCCCTTTTTGccccaaaaaacattaaaaaacaaaaaacttcccATCTACACTGACTAcaatatccattaaaaaaaaaaaatccattatgtgtgtataaatacatttataaagaacTGCATTCACAGAATTGCCATCAAGCGACTTCCATTCTATTGCCGGCTACTTTTCAACCTTCATTTActtagaaatacagaaatatctgcTATACATCCACCCTGTGATAGTGTTGTGCTATTGAAGCCAACCCTAACCCCTGTGGTGTAACTGGCTTGTGGTGGAGAGCGGCTTTGACTAATGCGAGATCTTTTAACAAATTAGCTCCACAAGCCTTCTAAATGAAATGGTCATTCCGAAAGCCTGATCTCACTATCTAGGCAATTTTGGAGAGATAAACACCTCAGTGGTGCAGTTTTGGGATGTGAATCACAAGACACTAATATGGAACATGACTCTGAAGTTGCCTTTAAAGTACATCAAATAGTAGGTTGAGCATTCAAACTTTACCTTTAtgacatcaaaaataaaatgtgctgacTGTGTATGCAAATTAGGGCACTATAGTAAACcatcaaaaatatgtattaaaaaaaaacagcaaatgagCAATTAAACTGAATAATCTGATTAAAAGTATACTTTAAAGCCATAGAATATGTTATAATACTACACATTGCAATTCATCAACTAAACAAAGATTTAAAGCTCAATTTACTTGTTAATTCAAAGGCAACATCATGTTCGGTCTCAAAGTGTCCTGCTTTTAAGTGGCCACCCTAGATCAGCAGGAAACGGAGCTACATTAGACTGAACCGAGTCAAGTGACTCGATCGTCCACCTGAAGAGAATAACAAGGCCTGATTTCAGTACGATCATTTCCggaccaaaaataaatgttgaaaaggaaaaacGAATAGAATAGAAAAGAATAGCCACACTATGTAACACACTTGATAGTGAAATTAAACAACCCCCcctaaaaaatacattgcttaGGTCCCAGTTTTGttcatttagattttatatGCTTTGTCACTTATTCAAAATACTGTTCTTAAGGTGCAGTTTTGACTGATTTATAGGCTAGTCTGGCAAACATTTCAACGACACATTGAGCAGAATCGCTACACAATAAGCCACTGTAGCGTCTAGTCTCTCATGATGTTTCAGTAAATCCGTATAACAGCGCTCAGTCTCTCTCCTGTACTGGCTGCTCGATGTCAAGTCAGGGAGCCCCAGACAGTCAGTAGTCCCGATAGCCGTACGGACATCCTTTTCCTTGCAAAGATGCTCAAATATCTTGATGCTAAGATGTTGCGTAGTTTACATTTGTGTGCCACAATGCTCAGCAAAAGCAATATCAGATCCTATTAAACATACTGCCACAGTCCAGTTAAGAGGAACCCTCCCCAGTACAGCGCGTTCTTTTGAGAACGGTCAGATCCACACAGATACAGCAGTGATTCACCTTGCGGTCGGCTCTGAACTGTGGGAGTGTTATCTCCAGACGACACTAATTAACACTGAGCAACGGGTCATCGTTTGCGAGAATCAATGCACAAAAATCCGTGAAGAAGCTCTACAGCCAAACTTCATGAATGTTTacgagtgtgtgtatatattgggccacaaaataaatcaaatcagcTCGGCACACAATCAGGGATCTTCACAATAAGCaactgttttttagttttttagtttttacccTACTTGAATATCCCATTAGCAAATTACTGAACTGGAACAATTCAACACGGTTTAACAAAGGTTACAGTTTCAATCAGCACTGTACCCAGAGATCAAAAGTGAATCtctcagaaataaaatgaaactgaaacaagCCCCGACAGAACTGACACGGAGATCAATGCTGTCAACGGAGGGGTTGACACGAAAATAAATCCCACAGCATCCTGTGGTGCTTCACGCGATTACACGGGATTATAAGACACACATGATCATCGGTTGCACTGCTCATACGTGACTGATTGAGATGTCTGGGTTTGGGAAGACCTGGTGCAGAGATTTACAAGTTCTAGGTCTCCTTAGAAGAATGATGTCATCAGGGGAGTAAGGGGTAAGGCTTCAGACCGGTTACATTACATTCATgaaagaggtggggggggaccGATTGGCAAGCTTGGACTATATAATAGTTGGGTTTGCCCTTTTGGGAGTATGCTGCACGTATGGAAAAATTAGCATTCGGACTCGAGTATAATTACGAGGAGATACTGTGACCCTAATCCCTTCCGGTGCGACAAAACCAGACACTATTTatcaagacaaaataaaaatcaacggGTCACGATTGAGCGTCTTGTCAATTAAACAGTCAACATGCAGGTGAGGCGACGGCATCAACCAGGACAAGCATGACCACGGGAGATGGAACATGCTACCGACACACCTCTCTTCCCAGAGGACCCGTGGGGACGGCCCGGCTCAGGCACTACAGTTCTGGGATGCAAAATCCACTGCAGGAACATGAGTTGAGAAAGCAGGAATGTAAAGTTCAATCTGTTCGTTTCTTTCAGTACAAAACCACTCGTATAAATGCCCAGTATACATGTAGTATATTTCACATTGCCTGCGAGTGACAGAACGCATCACCAGTGACCCTTGAACTGCACCGCACTGCTCTTCAAATCTAGTCCTCCGTGGGCCAGAGAGCTTTGgggTGCAGTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170938 lncRNA downstream 26606 16100809 ~ 16101090 (-) True G136024
TU170894 lncRNA downstream 186402 15920259 ~ 15941294 (-) True G135987
TU170872 lncRNA downstream 311525 15813120 ~ 15816171 (-) True G135975
TU170870 lncRNA downstream 315943 15810796 ~ 15811753 (-) True G135973
TU170843 lncRNA downstream 418471 15706934 ~ 15709225 (-) True G135957
TU170958 lncRNA upstream 10561 16171759 ~ 16172088 (-) True G136041
TU170991 lncRNA upstream 54203 16215401 ~ 16217071 (-) True G136066
TU171058 lncRNA upstream 121251 16282449 ~ 16291458 (-) True G136112
TU171128 lncRNA upstream 358688 16519886 ~ 16522448 (-) True G136172
TU171134 lncRNA upstream 365319 16526517 ~ 16537271 (-) False G136175
AMCG00012322 mRNA downstream 73478 16049454 ~ 16054218 (-) True AMCG00012322
AMCG00012323 mRNA downstream 122465 15993763 ~ 16005231 (-) True AMCG00012323
AMCG00012314 mRNA downstream 220614 15895089 ~ 15907082 (-) True AMCG00012314
AMCG00012315 mRNA downstream 242073 15884110 ~ 15885623 (-) True AMCG00012315
AMCG00012311 mRNA downstream 252966 15864062 ~ 15874730 (-) True AMCG00012311
AMCG00012328 mRNA upstream 23201 16184399 ~ 16187510 (-) True AMCG00012328
AMCG00012329 mRNA upstream 94077 16255275 ~ 16255478 (-) True AMCG00012329
AMCG00012334 mRNA upstream 157437 16318635 ~ 16322600 (-) True AMCG00012334
AMCG00012333 mRNA upstream 166003 16327201 ~ 16333505 (-) True AMCG00012333
AMCG00012335 mRNA upstream 194312 16355510 ~ 16361869 (-) True AMCG00012335
TU170896 other downstream 202543 15921604 ~ 15925153 (-) True G135988
TU170840 other downstream 395562 15706934 ~ 15732134 (-) False G135957
TU170710 other downstream 1333538 14725510 ~ 14794158 (-) True G135857
TU170709 other downstream 1406526 14717472 ~ 14721170 (-) True G135856
TU170666 other downstream 1524894 14599222 ~ 14602802 (-) False AMCG00012292
TU170997 other upstream 58928 16220126 ~ 16227243 (-) True G136070
TU171073 other upstream 151523 16312721 ~ 16314393 (-) True G136125
TU171089 other upstream 256994 16418192 ~ 16423900 (-) False AMCG00012340
TU171094 other upstream 270154 16431352 ~ 16432813 (-) False AMCG00012340
TU171187 other upstream 537444 16698642 ~ 16699110 (-) True G136222

Expression Profile