RNA id: TU170957


Basic Information

Item Value
RNA id TU170957
length 357
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G136040
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16171739 ~ 16172095 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctcaaattggaaactgcaggcattcagggtaatgtaagtagatggattatgaactggttgatgtctaggaaacagagggtgtcgattagaggagtcgcttctaactggagtgaggttgttagtggagttccacagggatcagtactagggcctttgctttttctaatctatattaatgatctggactctgggatagttaacaaacttgtcaaatttgcagatgatactaaaataggtggctcagcagatacaatcttggcagcacaggctattcagagggacttagataatattcagttgtgggccgacacctggcaaatgaaattcaatgtggacaagtgcaagataatacatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170940 lncRNA upstream 35024 16131831 ~ 16136715 (+) True AMCG00012324
TU170939 lncRNA upstream 68435 16102894 ~ 16103304 (+) True G136025
TU170591 lncRNA upstream 271118 15879134 ~ 15900621 (+) False G135779
TU170590 lncRNA upstream 292235 15879134 ~ 15879504 (+) True G135779
TU170578 lncRNA upstream 359618 15811913 ~ 15812121 (+) True G135768
TU170969 lncRNA downstream 21880 16193975 ~ 16196114 (+) True G136051
TU171136 lncRNA downstream 365967 16538062 ~ 16539149 (+) True G136177
TU171150 lncRNA downstream 393804 16565899 ~ 16566231 (+) True G136191
TU171156 lncRNA downstream 448160 16620255 ~ 16632264 (+) True G136195
TU171166 lncRNA downstream 471662 16643757 ~ 16648562 (+) False AMCG00012348
AMCG00012319 mRNA upstream 2023 16164268 ~ 16169716 (+) True AMCG00012319
AMCG00012320 mRNA upstream 16620 16142650 ~ 16155119 (+) True AMCG00012320
AMCG00012324 mRNA upstream 29098 16104905 ~ 16142641 (+) False AMCG00012324
AMCG00012321 mRNA upstream 70878 16057853 ~ 16100861 (+) True AMCG00012321
AMCG00012317 mRNA upstream 114636 15987059 ~ 16057103 (+) True AMCG00012317
AMCG00012318 mRNA downstream 4301 16176396 ~ 16183090 (+) True AMCG00012318
AMCG00012325 mRNA downstream 26908 16199003 ~ 16210644 (+) True AMCG00012325
AMCG00012327 mRNA downstream 40818 16212913 ~ 16226772 (+) True AMCG00012327
AMCG00012326 mRNA downstream 115782 16287877 ~ 16288823 (+) True AMCG00012326
AMCG00012330 mRNA downstream 120176 16292271 ~ 16300821 (+) True AMCG00012330
TU170595 other upstream 240891 15911248 ~ 15930848 (+) True G135781
TU170455 other upstream 547858 15119725 ~ 15623881 (+) True G135670
TU170550 other upstream 607903 15559904 ~ 15563836 (+) True G135744
TU170537 other upstream 692190 15452069 ~ 15479549 (+) True AMCG00012302
TU170424 other upstream 1161936 14988298 ~ 15009803 (+) True G135649
TU170961 other downstream 4304 16176399 ~ 16182668 (+) False AMCG00012318
TU171007 other downstream 78153 16250248 ~ 16259332 (+) True G136076
TU171045 other downstream 221604 16393699 ~ 16432813 (+) True AMCG00012338
TU171165 other downstream 471662 16643757 ~ 16648562 (+) True AMCG00012348
TU171182 other downstream 502184 16674279 ~ 16697391 (+) False AMCG00012349

Expression Profile