RNA id: TU170969


Basic Information

Item Value
RNA id TU170969
length 2140
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G136051
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16193975 ~ 16196114 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAtgggatatatttatttaattttccactGCACATCCCTTCATACATTTCACACAATTAACACTGCTCCCAATTGGTATTAAccataataaataaagctttaatGACAAATGACATATAATAATGCAGGtagagacatttatttttgtgtgatcttgaaataaatcatacagtatCGTTAGACAGATTTGCTGTTGTACACAACACATTAGCACTCCACATGCCTCCTTCAAATATGACAAAGTTAAGACTAAACCAAAGATCAACACCATTTTGGGAATAAAACTCAAGTCCAAAGCTACAACTTATGAAAGAGTTAAACAATGCTGTCCAGTCCACCCCCAGTGTGAGTCCTCTGGTGTCTCTTGAGGGTCCCTGACCGGATGAAGCTCTTCCCGCACTGGCTGCAGCCATACGGTTTCTCCCCCGAGTGGATGAGTTGGTGCGTCTTCAAGTAGCCCTGCAGGCTGAAcgtcttcccacactgggtgcagcagAACGGCTTCTCCCCACTGTGGACACGCTGGTGCGAGCGCAGGCTGCCGGCGTAACGGAAACGCTTCCCGCACTGGAGACAACGGAAAGGCCTCTCCCCAGTGTGCACCCGCTGGTGCGTTGCGAGGCTGGCAGACCGCTTGAACGTCTTCCCGCACTGGCTGCAGCTGTACGGGGTCTCTCCGGTGTGGACCCTCTGGTGCCTCTTGAGGTTGTTGGCCGTACGGAAGCGCTTCTCACACTGGACGCAGCCGTGCGGTCTCTCCCCTGTGTGGATCAGCTTGTGCAGCTTGAGCCGCCGGGAGAGGTTGAAGGTCTTGCCACAGAGGGAGCACAGGTAGGGCCTCTCGCCCGAGTGCACGCGCTGGTGGATCTTGAGGCTGCAGGCGGCCGTGAAGCTCCTCTCGCACTGGGTGCAGCGGAACGGCTTCTCCCCCGTGTGGACGCGCTCGTGCGACTTGAGCTGCCCCAGTTGGCGGAAGCTGCGGCCGCACCAGGGGCAGCCGTAGGGCCTCTCCCCCGTGTGGATGCGCTGGTGGGATTTGAGAGTGCAGGCGGCGGTGAAGCGCTTCCCGCACTGGCCGCAGCAGTATGGCCTCTCCCCCGAGTGGATGCGCTGGTGGATTTTGAGGCTGCAAGAGGTGGGGAAGGCCTTGCCGCACTGGGCGCAGTGATGCGGTCTCTCTCCTGAGTGGACCAGCTGGTGCAGGTGGAGCTTGGTGGGATGGTTGAAGCTGTTCCCACACTGGCCGCAGCTGTATGGCCGCTCGCCGGTGTGAGACAGCTGGTGGATTTTAAGGTTGTACGCTGTACTGTAGGTCCTCCGGCACTGGGCGCAGCGATGGCAGGGCTGGGTGTCTGTAGGGGAGTCAATGGCTGTATTGGGATTTCCAGGCAAAGATGAGGGCGTGGGGGAGGTGGAAGGTCCTGGGAATGGCTGTGGGCACTGTGATGATAGACCCTCATCCTCCACTCCAAACTCAGCGCTGTGGAAAGATTGGAGGTCCATGTGTTGCTCCAACTTCACACAGTCCAGTCCATCAATCTCTTTCTTAATTCTGACAGATTGCAGGCTGGGATCCCCCAGCTCTGCGCTGTGGCCATAATGCAGACTGCTGTGCTCTACCTTTATGTCATCCTCATCATCATGCTCTTCTTTAATCTGAACGGTCACAATAAGAGGTCCATCGTCTTTAATGGAGCCTGGCTGTGCACTACACAAGGACTGACAAGGTTCTGATTTAATGTAGTCCAGTGCATCAGCCTCAGTTTTAGTGCGTTCAGACCCCAGACTGGATTGAGGGCCCAGTTCAGAAGTGCTGAGAGGTTGTGTCTCCGCAGTGTGGGTGGAATCTAAACCAGGGCTGCTACTCACTTCTGATCCCAACATATCAAATCCTTGCATGACAAACTAAGATCCTAGTTGGCGTTCTGTTGTTACACACCCCGGCTCTGACATGCAACACGACACCAGTCCACTGAACTCCTCTAACTTCTGTCCAGTCCAGTACTAATGTTATGTGTCTTCAGTACctgtgggctctgtgtcctgcctcagactggagctCCACTCCTGctcacagtgctgctgctcaatgggagccctttccccagagtcagggagagcgctggcttctacagctcc

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170957 lncRNA upstream 21880 16171739 ~ 16172095 (+) True G136040
TU170940 lncRNA upstream 57260 16131831 ~ 16136715 (+) True AMCG00012324
TU170939 lncRNA upstream 90671 16102894 ~ 16103304 (+) True G136025
TU170591 lncRNA upstream 293354 15879134 ~ 15900621 (+) False G135779
TU170590 lncRNA upstream 314471 15879134 ~ 15879504 (+) True G135779
TU171136 lncRNA downstream 341948 16538062 ~ 16539149 (+) True G136177
TU171150 lncRNA downstream 369785 16565899 ~ 16566231 (+) True G136191
TU171156 lncRNA downstream 424141 16620255 ~ 16632264 (+) True G136195
TU171166 lncRNA downstream 447643 16643757 ~ 16648562 (+) False AMCG00012348
TU171207 lncRNA downstream 563739 16759853 ~ 16765108 (+) True AMCG00012351
AMCG00012318 mRNA upstream 10885 16176396 ~ 16183090 (+) True AMCG00012318
AMCG00012319 mRNA upstream 24259 16164268 ~ 16169716 (+) True AMCG00012319
AMCG00012320 mRNA upstream 38856 16142650 ~ 16155119 (+) True AMCG00012320
AMCG00012324 mRNA upstream 51334 16104905 ~ 16142641 (+) False AMCG00012324
AMCG00012321 mRNA upstream 93114 16057853 ~ 16100861 (+) True AMCG00012321
AMCG00012325 mRNA downstream 2889 16199003 ~ 16210644 (+) True AMCG00012325
AMCG00012327 mRNA downstream 16799 16212913 ~ 16226772 (+) True AMCG00012327
AMCG00012326 mRNA downstream 91763 16287877 ~ 16288823 (+) True AMCG00012326
AMCG00012330 mRNA downstream 96157 16292271 ~ 16300821 (+) True AMCG00012330
AMCG00012332 mRNA downstream 111295 16307409 ~ 16316260 (+) True AMCG00012332
TU170961 other upstream 11307 16176399 ~ 16182668 (+) False AMCG00012318
TU170595 other upstream 263127 15911248 ~ 15930848 (+) True G135781
TU170455 other upstream 570094 15119725 ~ 15623881 (+) True G135670
TU170550 other upstream 630139 15559904 ~ 15563836 (+) True G135744
TU170537 other upstream 714426 15452069 ~ 15479549 (+) True AMCG00012302
TU171007 other downstream 54134 16250248 ~ 16259332 (+) True G136076
TU171045 other downstream 197585 16393699 ~ 16432813 (+) True AMCG00012338
TU171165 other downstream 447643 16643757 ~ 16648562 (+) True AMCG00012348
TU171182 other downstream 478165 16674279 ~ 16697391 (+) False AMCG00012349
TU171221 other downstream 615592 16811706 ~ 16863593 (+) True G136245

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU875321 True 613 TUCP 0.48 2 NC_048573.1 8278817 ~ 8283324 (-)