RNA id: TU170991


Basic Information

Item Value
RNA id TU170991
length 677
lncRNA type inter_gene
GC content 0.57
exon number 6
gene id G136066
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16215401 ~ 16217071 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGACCAGGGGCGCTCCTCCTTTCACCTTCTCccactccccctctccctctccttcaccCTCGCCTTCCTCTCCCTCGCCCTCCTCCTGCTGCAGCTTCTTACGGTGGCCCTTCTTTCTATcatccttctccttcttcttgtcACCCGACCGCCGTTCCCCATCCTgggtcTTCTTCAGGAAGACCACGGCCAGTGAGGCGTTCTTGCCCTCATCGTCCTCGCTCTCCGAATCAGAGTCCACCGTGTCTGAGCCCCAGTCTTCATCGTCATCGTCGTCACTGTCCGACTCTTCGTCCTCGGCACCCTTCAGGAACTTTCTCGGGTCACCGGTTGCCTCGGGGGTCTTCTTCTTCAGGAAGGTCTTCGCGGACATCCCATCATCATCCTCGCCTTTCTCCCCTTTGCTGTCTGATGAAGAGCCTTCAGAATCTTCGTCgtccttctcctcttcctcgtcGGCCGACTGCTCGGGATTCTCCTTGTAGCTGCCGATCTCTGCCTCGTAGTCCCGGTTGTACTTGCGGATCTTCTGGCGGAGAGTACTCAGAGCCTTCGCGTTGTTCTTGTTCATCTTCTTCTTGCCCTCTTTATCTTCCCAAAGCTCATTGAGGTAATCCTCCAAGTCAGCCAGCAGGCGGATGTAGAAGGGAGGGACCCCCTCTTTGTCCACTATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170958 lncRNA downstream 43313 16171759 ~ 16172088 (-) True G136041
TU170945 lncRNA downstream 54203 16127696 ~ 16161198 (-) True G136029
TU170938 lncRNA downstream 114311 16100809 ~ 16101090 (-) True G136024
TU170894 lncRNA downstream 274107 15920259 ~ 15941294 (-) True G135987
TU170872 lncRNA downstream 399230 15813120 ~ 15816171 (-) True G135975
TU171058 lncRNA upstream 65378 16282449 ~ 16291458 (-) True G136112
TU171128 lncRNA upstream 302815 16519886 ~ 16522448 (-) True G136172
TU171134 lncRNA upstream 309446 16526517 ~ 16537271 (-) False G136175
TU171132 lncRNA upstream 313795 16530866 ~ 16537271 (-) True G136175
TU171145 lncRNA upstream 334959 16552030 ~ 16552281 (-) True G136186
AMCG00012328 mRNA downstream 27891 16184399 ~ 16187510 (-) True AMCG00012328
AMCG00012322 mRNA downstream 161183 16049454 ~ 16054218 (-) True AMCG00012322
AMCG00012323 mRNA downstream 210170 15993763 ~ 16005231 (-) True AMCG00012323
AMCG00012314 mRNA downstream 308319 15895089 ~ 15907082 (-) True AMCG00012314
AMCG00012315 mRNA downstream 329778 15884110 ~ 15885623 (-) True AMCG00012315
AMCG00012329 mRNA upstream 38204 16255275 ~ 16255478 (-) True AMCG00012329
AMCG00012334 mRNA upstream 101564 16318635 ~ 16322600 (-) True AMCG00012334
AMCG00012333 mRNA upstream 110130 16327201 ~ 16333505 (-) True AMCG00012333
AMCG00012335 mRNA upstream 138439 16355510 ~ 16361869 (-) True AMCG00012335
AMCG00012340 mRNA upstream 198036 16415107 ~ 16432050 (-) True AMCG00012340
TU170896 other downstream 290248 15921604 ~ 15925153 (-) True G135988
TU170840 other downstream 483267 15706934 ~ 15732134 (-) False G135957
TU170710 other downstream 1421243 14725510 ~ 14794158 (-) True G135857
TU170709 other downstream 1494231 14717472 ~ 14721170 (-) True G135856
TU170666 other downstream 1612599 14599222 ~ 14602802 (-) False AMCG00012292
TU170997 other upstream 3055 16220126 ~ 16227243 (-) True G136070
TU171073 other upstream 95650 16312721 ~ 16314393 (-) True G136125
TU171089 other upstream 201121 16418192 ~ 16423900 (-) False AMCG00012340
TU171094 other upstream 214281 16431352 ~ 16432813 (-) False AMCG00012340
TU171187 other upstream 481571 16698642 ~ 16699110 (-) True G136222

Expression Profile