RNA id: TU170997


Basic Information

Item Value
RNA id TU170997
length 2683
RNA type TUCP
GC content 0.50
exon number 9
gene id G136070
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16220126 ~ 16227243 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACCATTTGTGCTGTGGTTCTGGAAGCCATTTCTTCACGTGTTCTTTTTGCACGAGTTTCTTGGTGGCTTAGCCAATACGCACATACACAAAACTGTCACACAAGGTGTATCGGTTTTCCTTAAACTGCTTATCCTGTGCCACACAGTATTTACAGATAAttgggaaaatatttttaaataaaatagtctgATTTCAGTCTTAAAATTACTAGACCGCTTGAACGTGGGGGGCAGGTAGATTGTCCAGGTTTGGGCCCCAAGCCCTTGCTTAGTCGGCTttgtttaacatacATTTACAATGTTACGGACACACAAACAGACGCAGAGAGACTAGGGATGGTTCGAGTGCAGGGTTTATTGTCTCTCTATGCAGGAAGGTGAACAATGGGGTGAACAGGGGGCAGTGTGGGGGTGTGGGCCAGGCGCAGACACGGGGAGCGCCGCTCAGTAGGAGCTCTGGTTCTGGCGGTAGCCGCCCCGCTGGTATCCTCCCCTCTGCTGGTATCCTCCCCTCTGATCTCGTTGGTAACCTTGCTTCTGCTGGTAACCGCCTCTCTGATCTGAAAACGCACAGTGGGAACAACAGGTTGAAcacttcacacacagacagagcacAGCCGGCCCTGCCATAGCACACTGAGTCCCGACAACGTGAGGACACAGGCCGAAGCACATGCTGAAGTCAATAGGGTGGGAAGAGCTCCTTTGTTTATTACGGAGGTTATTCAGTATAAAAGATTTAAACAAGGAGCTTGAAATCGACTTCTATAAGGGTTTGGTCCTGCAGGGAACCAGAGCAAATACGGCATGACTGGGTTTGTGCCGCGTATTCGAAACCCAGGGTGTGGTTCTCTCTGTCCCCAGGATTGTCACTGTAATATGGCAGAGTCCcatacattaatacagcagagctgcagagtcACACACTGGAGTGTATAATGTTGTGAGATAAAGACACACATTGTCCAGAGCTTGTAAAGAGCCAGCAGACCGAATTAAGCTACGGTTTTAGAAGACACCGTGATCTTGTAGACACGATACTTATGACTGACGCACCTAGTCGAGTGGAAAGTCACATTTCCTCTACCAGATCAGTTCCTATGATATGAGATATTGCCCGAGAGCAGACACTGTACTTTACAGCATCTCGGCATTAACTGGACACCAAAACACTGCAGCTTAAAAGTGAGGGTCTTTTGTAAAAggatctttacattttttaagtgcTACGTCAAGCTTTAAACGGGTCTCCAGTTCAATAATTGCCTGTGGTAAGCTGTATTTTACCGCTTATTAAAAGCCTGAGATGCTTTGGACTCCTGCGTCTGCCGTACttcttgattttaaaagcaggcTACCGAAATGTGTAATCCATTTACCGGTTCTTAATAAGGCTATAGTGACAGGGGCTGTAATCATAATCTCACATTCTCTGCACAGAATCCAGTAAATACATGAACACATTAAAAACTGGTTATCTTTCCCCTCCCCACCACCCAAGAACCAAACTAAATAATTCTCTATtgtccatttttaaatgactatgTATATATAGggtaaaacatggatgacaattTAAGATAAGACAACATCTATTGTTTATACATCTTAGACAGTGGGCCGTGTGTGTCGAGAGGTGTAAGGTAGAGACAGTCACTCCAGTCTCCCAGAGAAACTGTCCCAGGCACTTACCTCTCTGGTAGCCCTGTTTCTGTTGGTAGCCTCCTTTTTGGtCTCTGTTGAAATATCCTCCGTAGACGCCCTGTTTGAGGTCGAACACCCTCTCGTTGTTCTCCACCAGGCCGCCCAGCTTCTCCGCCAGCTGCAGCGCCATGTTCTGCAGAGAGGTGGGCTCGGTGCGGTGCATCACCACCGTCTGGGTGGGCTGGTCCAGGGAGGCCAACTCTTCGTTGATGATCATCTTGCTGATGATGCTGTGCACGGTGGGCAACTCCAGCTCAAACATCTCCGACAGCGTTTCCATACTGAGGACAACAGGAGGAAGGGCAGAGGGGGGGGAAAGGTGAATACATAAcgaaataaagaataaatgtcTCGCACAGAGTTGACCCCAAACCGAATTTGACTTTTACCTGATGGAGTCGTACACACTGCTGTAGGTGAAGAGATAAGTGCGCAGAGATTCCTCCTGGATCTCCTGACCAGCATCTCTCGCACGCACTGCGTCTCGGGGAACAGATCCCACACTTTGCTGTTCATCTTCTCGTTGATGATGAAGCCGTGGCAGGTCCTCCAGTCGCCCATCTTCATGGCCTTGGAGGCGGCCACCACGTGCTCTCGCATGCTCTCGGGGGGGCCCCAGCAGGGGCTGCCTCTCGCCCACCCTGAGCTGGTGGTGGAACTGCTTGCTGATCATGCGCCGGCGGGCGTCGAACTCGTGGGCGGCCATGTAGGGGATCTCCAGCAGCATGGCCGACACCAGGTACACGCACTCCAGCAGCTCCAGGTTAATGTGCATGTGAGGATTACCTGTCGTCGCTTCTCGATCTTCTCCTGCTCGGCGTTCCTCTCCTGCATGTTCCTCATCAGCAGGCCCTGGcccagcagctccttggctcggCCGCTGGACTGGATGTCCAGCAGGGCATTATGGGCGTCCTTGATCATGCCCTGGCGGAAGGCGCAGATGCCCAGCTGCACCATGGTGCGGTTATACAGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170991 lncRNA downstream 3055 16215401 ~ 16217071 (-) True G136066
TU170958 lncRNA downstream 48038 16171759 ~ 16172088 (-) True G136041
TU170945 lncRNA downstream 58928 16127696 ~ 16161198 (-) True G136029
TU170938 lncRNA downstream 119036 16100809 ~ 16101090 (-) True G136024
TU170894 lncRNA downstream 278832 15920259 ~ 15941294 (-) True G135987
TU171058 lncRNA upstream 55206 16282449 ~ 16291458 (-) True G136112
TU171128 lncRNA upstream 292643 16519886 ~ 16522448 (-) True G136172
TU171134 lncRNA upstream 299274 16526517 ~ 16537271 (-) False G136175
TU171132 lncRNA upstream 303623 16530866 ~ 16537271 (-) True G136175
TU171145 lncRNA upstream 324787 16552030 ~ 16552281 (-) True G136186
AMCG00012328 mRNA downstream 32616 16184399 ~ 16187510 (-) True AMCG00012328
AMCG00012322 mRNA downstream 165908 16049454 ~ 16054218 (-) True AMCG00012322
AMCG00012323 mRNA downstream 214895 15993763 ~ 16005231 (-) True AMCG00012323
AMCG00012314 mRNA downstream 313044 15895089 ~ 15907082 (-) True AMCG00012314
AMCG00012315 mRNA downstream 334503 15884110 ~ 15885623 (-) True AMCG00012315
AMCG00012329 mRNA upstream 28032 16255275 ~ 16255478 (-) True AMCG00012329
AMCG00012334 mRNA upstream 91392 16318635 ~ 16322600 (-) True AMCG00012334
AMCG00012333 mRNA upstream 99958 16327201 ~ 16333505 (-) True AMCG00012333
AMCG00012335 mRNA upstream 128267 16355510 ~ 16361869 (-) True AMCG00012335
AMCG00012340 mRNA upstream 187864 16415107 ~ 16432050 (-) True AMCG00012340
TU170896 other downstream 294973 15921604 ~ 15925153 (-) True G135988
TU170840 other downstream 487992 15706934 ~ 15732134 (-) False G135957
TU170710 other downstream 1425968 14725510 ~ 14794158 (-) True G135857
TU170709 other downstream 1498956 14717472 ~ 14721170 (-) True G135856
TU170666 other downstream 1617324 14599222 ~ 14602802 (-) False AMCG00012292
TU171073 other upstream 85478 16312721 ~ 16314393 (-) True G136125
TU171089 other upstream 190949 16418192 ~ 16423900 (-) False AMCG00012340
TU171094 other upstream 204109 16431352 ~ 16432813 (-) False AMCG00012340
TU171187 other upstream 471399 16698642 ~ 16699110 (-) True G136222
TU171188 other upstream 472232 16699475 ~ 16699791 (-) True G136223

Expression Profile