RNA id: TU171007



Basic Information


Item Value
RNA id TU171007
length 350
RNA type TUCP
GC content 0.43
exon number 4
gene id G136076
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16250248 ~ 16259332 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGATTGATGGAACACATGAAAATCAGTGCATGGCTGACCTGTCTGCACGATTGATCAGACCACACCAGTCACAGGAAGCTGTGCAATTGGAAAGTATAGATCTAAGGAATAAAGCCATGATTCATCTCTGTGAAAGCCTCAGAGAGAAAGGAGTCGCAATAAAGGATGTGTGGTTGATCCTGATCGGCATTACAGATGCCTGCATCGATGATCTGTGCTCCTCTCGCAGCCTACATCAGTCAATGAAACACCTTGTATTGTATGACAGTGAATTTACAGAGGCATCAATACCTGCCTTGATATGCTTTATTGAGAAATGCAACAACCTAGAAAACTTGCAGTTGGATGTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU170969 lncRNA upstream 54134 16193975 ~ 16196114 (+) True G136051
TU170957 lncRNA upstream 78153 16171739 ~ 16172095 (+) True G136040
TU170940 lncRNA upstream 113533 16131831 ~ 16136715 (+) True AMCG00012324
TU170939 lncRNA upstream 146944 16102894 ~ 16103304 (+) True G136025
TU170591 lncRNA upstream 349627 15879134 ~ 15900621 (+) False G135779
TU171136 lncRNA downstream 278730 16538062 ~ 16539149 (+) True G136177
TU171150 lncRNA downstream 306567 16565899 ~ 16566231 (+) True G136191
TU171156 lncRNA downstream 360923 16620255 ~ 16632264 (+) True G136195
TU171166 lncRNA downstream 384425 16643757 ~ 16648562 (+) False AMCG00012348
TU171207 lncRNA downstream 500521 16759853 ~ 16765108 (+) True AMCG00012351
AMCG00012327 mRNA upstream 23476 16212913 ~ 16226772 (+) True AMCG00012327
AMCG00012325 mRNA upstream 39604 16199003 ~ 16210644 (+) True AMCG00012325
AMCG00012318 mRNA upstream 67158 16176396 ~ 16183090 (+) True AMCG00012318
AMCG00012319 mRNA upstream 80532 16164268 ~ 16169716 (+) True AMCG00012319
AMCG00012320 mRNA upstream 95129 16142650 ~ 16155119 (+) True AMCG00012320
AMCG00012326 mRNA downstream 28545 16287877 ~ 16288823 (+) True AMCG00012326
AMCG00012330 mRNA downstream 32939 16292271 ~ 16300821 (+) True AMCG00012330
AMCG00012332 mRNA downstream 48077 16307409 ~ 16316260 (+) True AMCG00012332
AMCG00012331 mRNA downstream 87744 16347076 ~ 16353476 (+) True AMCG00012331
AMCG00012341 mRNA downstream 105179 16364511 ~ 16364896 (+) True AMCG00012341
TU170961 other upstream 67580 16176399 ~ 16182668 (+) False AMCG00012318
TU170595 other upstream 319400 15911248 ~ 15930848 (+) True G135781
TU170455 other upstream 626367 15119725 ~ 15623881 (+) True G135670
TU170550 other upstream 686412 15559904 ~ 15563836 (+) True G135744
TU170537 other upstream 770699 15452069 ~ 15479549 (+) True AMCG00012302
TU171045 other downstream 134367 16393699 ~ 16432813 (+) True AMCG00012338
TU171165 other downstream 384425 16643757 ~ 16648562 (+) True AMCG00012348
TU171182 other downstream 414947 16674279 ~ 16697391 (+) False AMCG00012349
TU171221 other downstream 552374 16811706 ~ 16863593 (+) True G136245
TU171233 other downstream 607205 16866537 ~ 16867448 (+) True G136255

Expression Profile