RNA id: TU171073


Basic Information

Item Value
RNA id TU171073
length 669
RNA type TUCP
GC content 0.51
exon number 3
gene id G136125
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16312721 ~ 16314393 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAGACTTAGAGCATGGATGGAGACCTACTAACATTCAACAGCTCCTGTAAATACTGTGAAATTACTGTCATAGGGCAAGTTTCAGGGTCAGGACCTCTCCAGATACCACATCAAAACTCTGCAAATGTTAAACTCTGCTTTCTCCCAAACAACCAGCAGACACTCGCTATGCTGAGATCATACTCACCCAGCTGAATTGGACCCAAACGTGCTGCGAAGGCATCACTCAGAGGGCAGGGGACCTCCTCAGGACAGGAGGCTGTATTAACTCTCGCTCTGTCTCTTTTTATCTCGCTGCAGGACTCTCACTCACTCCTGTGTCAGGAtatcagtctgtctgtccgtgAATCCTTCTGTTTTGGAGTGAAGCTGGTCCGGGGGGCCTACATGGACAAGGAGAGGAAACTGGCCAAGCAGGAAGGCCAGACTGACCCCATTCACCAATCGTGGGAGGACACCAACGAAAGTTACACCCAGTCTCTGGACACCATGCTGCACCTGATCTCCCAGCATCCTCAGCGGTACAACATCATTGTGGCTTCCCACAACGAGAAGTCTGTCAAACACACCATTGCCAGAATGAAGGAGCTGGGCATCCCAAAAGATTCGGGCTCGGTGTGTTTCGGACAGCTGCTGGGGATGTGTGATCACGTCTCACTGACATTAGG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171058 lncRNA downstream 21263 16282449 ~ 16291458 (-) True G136112
TU170991 lncRNA downstream 95650 16215401 ~ 16217071 (-) True G136066
TU170958 lncRNA downstream 140633 16171759 ~ 16172088 (-) True G136041
TU170945 lncRNA downstream 151523 16127696 ~ 16161198 (-) True G136029
TU170938 lncRNA downstream 211631 16100809 ~ 16101090 (-) True G136024
TU171128 lncRNA upstream 205493 16519886 ~ 16522448 (-) True G136172
TU171134 lncRNA upstream 212124 16526517 ~ 16537271 (-) False G136175
TU171132 lncRNA upstream 216473 16530866 ~ 16537271 (-) True G136175
TU171145 lncRNA upstream 237637 16552030 ~ 16552281 (-) True G136186
TU171164 lncRNA upstream 327970 16642363 ~ 16642613 (-) True G136203
AMCG00012329 mRNA downstream 57243 16255275 ~ 16255478 (-) True AMCG00012329
AMCG00012328 mRNA downstream 125211 16184399 ~ 16187510 (-) True AMCG00012328
AMCG00012322 mRNA downstream 258503 16049454 ~ 16054218 (-) True AMCG00012322
AMCG00012323 mRNA downstream 307490 15993763 ~ 16005231 (-) True AMCG00012323
AMCG00012314 mRNA downstream 405639 15895089 ~ 15907082 (-) True AMCG00012314
AMCG00012334 mRNA upstream 4242 16318635 ~ 16322600 (-) True AMCG00012334
AMCG00012333 mRNA upstream 12808 16327201 ~ 16333505 (-) True AMCG00012333
AMCG00012335 mRNA upstream 41117 16355510 ~ 16361869 (-) True AMCG00012335
AMCG00012340 mRNA upstream 100714 16415107 ~ 16432050 (-) True AMCG00012340
AMCG00012339 mRNA upstream 122403 16436796 ~ 16440071 (-) True AMCG00012339
TU170997 other downstream 85478 16220126 ~ 16227243 (-) True G136070
TU170896 other downstream 387568 15921604 ~ 15925153 (-) True G135988
TU170840 other downstream 580587 15706934 ~ 15732134 (-) False G135957
TU170710 other downstream 1518563 14725510 ~ 14794158 (-) True G135857
TU170709 other downstream 1591551 14717472 ~ 14721170 (-) True G135856
TU171089 other upstream 103799 16418192 ~ 16423900 (-) False AMCG00012340
TU171094 other upstream 116959 16431352 ~ 16432813 (-) False AMCG00012340
TU171187 other upstream 384249 16698642 ~ 16699110 (-) True G136222
TU171188 other upstream 385082 16699475 ~ 16699791 (-) True G136223
TU171387 other upstream 779106 17093499 ~ 17133907 (-) True G136378

Expression Profile