RNA id: TU171132


Basic Information

Item Value
RNA id TU171132
length 5901
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G136175
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16526517 ~ 16537271 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACAAGCAGAATCATAATAAATAGAAGCTGAAGCagcaacagcaataaaaacaaaagtcagaGTTTCTGGTGGATATCTATTTTTCAGTGacttttattattcattttttttgtgttttgtttagtttttttaagaggCGAAAGGAGAGAAGGCACAAGACGGAACATGATGTGACATCACAAGGTACATCCTACATCTACATTGACCAAAGCACACGAATACAGATGCCCACGTAGCCAAAGGGGTTGGCTGTCCTGCCGTTTCTTCCCTCACGACACCTGTGCTTCCTGCTGTCCTCAAACTAGCGTAGCAGGAGGCAGGGTTACGGTGTGACGTCACAGAGGGAGGTGTGGTCGTAGGGGTTGGGTTCTCAGTAGGCGTGGTTGGCAACGAAGAGTGATTCTCCAGCTGCAGCTCCCTTGTCTCCACTGGGGCTGTACTTCCCTACGGAAGCCTTGCTGTTAGTctacaagagagagagggagagagagaggttatcAAAGCTTGGTTGATATGAACATGTGTATACATGCGTGCGTCTGCCACTGATAGAAGTGGGAAACGTCAGTCggtcggtcagtcagtcagtgtcagtgggtcagtcagtcagctcATCAGTGCCTCCATACCAGCGCTCTCTTGATGTACTCCTCCTGAGCGGCCTTGGCATTCTCCTTCTTGCCCGCCCAGGCCTTCAGTGCAGAGGCCTGCAGGGCACGGCCAAATGAGAAGGTCAGGGCCCAGGGCTTGTGCAGGGGGCACTGGTTAATGGCGTTCAGGTTGATGGAGGCCTCCTCCTCACTCTGCCCACCAGACAGGAAAGttacacctgagagagagatagaggttCAAACTATGTGCCTACATTGACCGGCCAAGTCCAACAGAAAGatacaaactaaacaaagacTGCGAGAGAAAACATGCCATCGAAGactggagacacacagagagagagcaagggagagagaggggtgccAAAAGGAGAAAGGCGGAATGGACAGAGAAAGGCAGAGATGGGGAGAAAGACAAAAGAGAAAAGTAGACAACAGCCAAATCAGAAATATATGCCGAACAACAATCAAAAGCAATCTTCAACTTCTACCCAGTCCCCCACCCCGGACCCTGACCTGGCACAGCGGGGGGCACGGTTCGGCGCAGGGCAGTGACAGTTGCCATGGCAATCTCTTGGGGGGAGTATTTCTGGGGGCAGGAGTGTCCAGCGGTCACCATGTTGGGCTTGAGCAGGGTGCCCTCCAGGTAGACATGGTGATCAGACAGGGCCTTGTAGACGGCGGCCAGAACCTTCTGTGACGTACTGGCACCGTTTCAGGTCGTGCTCTCCGTCGGGCAGGATCTCGGGCTCCACGATGGGAACGATGCCGTGCTGCAACACAAGGACAACATGGATTGAACAGACTGACAGACGGGCACAGCAACTGCCATCTCGGTCAAAGTCTGTCACTGCAAAAAGAtgggcacagacacacaaaatgaaCAGCGCCTCATACCATCTGACAGATGCTGGCGTAGCGGGCGAGCACGTTGGCGTTCTCGATGATGGCGAGGTgggagggggtggtgggggtgatCTTCAGCACGCAGCGCCACTTGGCGAAGTCGGCGCCGTCCTTCTTATACTGGGCACAGCGCTCATACAGACCATCCAgccctgTGTGGTGGTCTCTCCATTAGTCCCGGCCAGAGGAACAACACCCTTGTCAACCTGCACAAGAACAAAGGTTAATTAACAATCTGTTCCTGCGTATTAAAGCCCCTTTCTCTCCGAATACAATGTTAAAGGATTgtgatgtttaatatttaatggaaaatattgGTCAATACAGCCTGCATTTAAGGTGAAATTCTCTCTTGCCCCATCAATCATGTAATCAAGCGTAGAACCCTGCCCGACCGAACCTGGCACCTTGCTTTCTGTCTCTCGAACGCGATATCCATCCACATCAATCCATCTCTGTCTAATCCCACGACCGTCTCCCCTCCGCTATACATCCCGTCCCGGCGCGCCCTCTCACCTTGATGCCGACCACCATGTCCTTGTCCTTGATGACCTTGGAGAAGACCTTGCCCGAGTCATCCTTCTGGTAGAGCGTCTCGTGGAAGAAGATCACGCCCCCGATGCAGGGCTTGACGCGGTCATCGGCGGAGAACAGGATCTGCCGGTAGAAGCGGCGGTTCTCGTCGGTGTTCTCCGCGTTGATGCTCTGCAGCCTCTTCGCCATGCTGCCTGAGagcgggagggagggagagagcgagcgagGGGTGAGGCAATGCAGGATAGAGACCTAGGCGAGGCGATTTCGTCCACGTTTGTCCTCCAAAACGAAATCTACTCATCCGGTACATCGAACCACATTTCGGAAATAACAGTGGTAGAATCTTGATCACCAGAAAAGTGATCTAAATTGCTTACACTTGAAATTAAAGGATTTGTAAACTGGCACACTCAccaaaatgattggtttatatgcACTCGTGTGTTAGAAGGAGTGTGAGGGTAAAATATAAGATTTTACGGTTTGATTGCATCATTTTAGTCAATACtttctaaattactttaatcCCAATCACGGCCACCGTAAATATCCCAAAGGAGGGCTTGTCTGTGATTCTGGATGTGGCGTTTCAACACTGACCGGGTGACCGAGAGGTAGGACTCCATGTTCACTGGGACACTTTAAGACGGGACGGGGTTTTAAAGTAGCCTTTAAATGGAAAGACATTAACACTTTAACCAGGCATTATTTACATGGTTGCCAAATTGAGTCCTGCTGCATCACAATAACTACACTTGTAGAGATGAGTAACtgtaatttaaactttaaatagtGCAGCATGATCATAATGTGTTCAAGGGACTGTATTTGTATTCCTCttttctgattattattcacaatgaATCCAAGAGGAAATGGCAGACTCACATCCAGTAAACACATTACTTTGGAAATAGTATGCACATTATTTCAGTATGCAGTTTAAaagtactttttttgttttaagtgataGCACAAGGGGGGACACTTTTTAGACAATAATAACCTCATATACACTGGTATATTAATACAGCCAACTGCTTTAAATGAACAATTCATTGACTGTAGaggaatgttttattgtgtaataTAGACACGCCTTTCCAACACAAAGGTAGAAAGAGAGGAAGTTAACAGATTGTTTTTAGCTGAAATGGTtaacaaaatctgtaaaaatTGCAACTATAGACTATATAAAATGATTTCCCTGGTAAATTCCTACCTGTTGGCAAATTTCTGCCACCCCATGATAAACCATTACTGTGCAGAATCCTGAATTATCGATAGCTGACTTGGATTTATGCTAATGGTGTTTACATGTCACGCACCCAGTTTGGCATTACAAACTAAACAAACGTCTGGGCTAATTTGCTGCCACCAAGCTGAATTTTCTCACGAAATTGCTGCTTGATGCACATGTTACCATTAGTATCATTGCTATTGTTGTTTCTGAGTGTGAGATTAAAGaggaaaatataatgcataaaaaaaacaccctcaAACACCGCCCTGTCTTGACATGCAGTAAAGTGTTtagattcatatttaataacagGAATAATCTGTGAGAGGTCTGATTCTCTGCTTGTACAAATTAACAAGTCCGTACCTCGGTGATGAGAGCGGAGTTTGTGGCAGCTTCCCTTTACATAACGGTCATACATCGCTAGCTAGGCTTCCTATTCATAAAAACACTGTTGCAAAATACTGCAAGAGGATCACTAGAATCTTGCAATTTCCTTCATCAAATCTTGGGCCTTTTCCTGTCAATTATCAAGACATAATCCTTAATGTAACCAccttatatttttgaaaaataatggtaTTCAGATTACTCACCTGACCCAAGTAACCATAGAGCACTAgttattcaaattttaaaatctgaatacCTAACGGCAATACCTGTATTCTGTTACTAcccagcactgtgtgtgtgtgtgtttaaagatCATGTAAACCGAAGTACGCTTTCTTCTTGAAAtcatcttaatatatatatttaaagaccAGTTAATACAATTGGAGGACATAAGTGTAGTTTTAGGTGTAATTGTAATTCAAACGCTGTAACtgtcaatgcattttcaattaccAAAGTAATTTTACCAAATTATAATGGACCCCAGATCTGAATTCAGAAGCTGGGCTCaattttctctccctctcagagtggtttcttttcaaattcatTAAGTAACTGACAGGATTAATTAGCTTAACGAATGTGGGCCTGACCTGTGGACTCATCAGCAGCGAGGATGCCCTTTCCAGGAGCGACGATACGCTGGGCGATATCAGACAGCTCCTTCTTCTGCTCCGGAGTGAGGAATGGGTACTGGTGAGGCATGGtgtctgaaagagagagagagagagagagagagagagaggggttaaatACAGATCCACTGACTTGCGGCACACTAGAGTGAACTGTACGGTACACCGCACTAAGAGGGGAAAAGGGCAGGAGTGTTGAATGTCACTTATAATACCTCTGCTGCTTCTCCTACCACAAAACTACCCTTATCAACAGCCATGgtgataataatataaatcagaaaGACAGTGAGTCATAGAAAGTGCACCAAACCTCTGATGTGCCAAGTCATGCAAACAGAGACAGGGATGGGCAGAAAAGGAGATAACGAAACCTCCAGAAAAGGGGTTATATACAGATTCATATATAAAAGACATGCATATATGgaatcaataattatttttattttttctttacaaaaattGGAATTGCCAAACATCAAACACGCAATATTGTGTAGATGACATAGATGATGCTTTGAGATCCCGGCCTATTATTCTAGTTGTgcaagtaatacaaaaaaaaaaatagcttaaTTGAATCTGAAGATTCAATCTTAATTGACTGATGGAGTCCAACCAAATCGTTGTGATGCTGCAGCAATTGATTTGACTTCATTAATAAAGTGTAATGGTTTATAAATAGAGTCAGTCCGCTGGTAAGCAGCTGAAGTGCTCAGTCAACCATATCGCATCGATGAGCTGCGTCAAAAGCATCAGCCAaattcatcaccatcatcatcacatTTCACAAATACGGATGCCAATATTGTATTCACGCGAAGGTATACATTCTTACAATACAGCCGCATAACCTTTTTAAAAGGCTTCAATGCAATGCACAATGATACAACAGCTCACAATCCCCAATTAAACCCATTTGCGGACATATTTCGAAACCCCAGGAAGTTTTCACGAAGGCAGATCTGCAGTGTAGGCTGGCACAACTCCCATTTCCCCTCAAGCCCTTCATGATCTGCATCCTGCTCCAGCGACATTAAAAGTGCTCTCCGCCGCGGATCCCTGTGCTTCCTTGAATCGGTGTTTAATACACTGCATTTCACTGCAGCGTGGCGCACCGCATGAAGATGCCATATTAGGAAATGGATACATTCAAATTGGGTCCGCACACATACAACtaaacaaccacaacaataacagtagtaactacatttgtattcttattcttattaataaACCCAGATTGATATGCAGATACATCCTCATCTCTCGGACACCGGCGCGTCCTTGCAGAAGCGGAACTGACCTTGAGGTACGAACTGACGGGGGCGGCGTATCTGAGACGAGGCAGACTGAAAAACAGTCTACTGCACGAAAAACAAACCcaagtcttttttcttttaaatactcaCTTTTCAGCGTCTTACCACACGAAGCAGGTTAACCGTAGCAGCTCGCAGCAGAGCCCTGTGTGCAACCCGAGCGCAGGAGATGGAGTGAGGCGGAGGCGGCGGGAAGGGAGTTAACTGCGCCTGCGTGACGCGGCCGGGCATTGCGACAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171128 lncRNA downstream 8418 16519886 ~ 16522448 (-) True G136172
TU171058 lncRNA downstream 239408 16282449 ~ 16291458 (-) True G136112
TU170991 lncRNA downstream 313795 16215401 ~ 16217071 (-) True G136066
TU170958 lncRNA downstream 358778 16171759 ~ 16172088 (-) True G136041
TU170945 lncRNA downstream 369668 16127696 ~ 16161198 (-) True G136029
TU171145 lncRNA upstream 14759 16552030 ~ 16552281 (-) True G136186
TU171164 lncRNA upstream 105092 16642363 ~ 16642613 (-) True G136203
TU171189 lncRNA upstream 162718 16699989 ~ 16700204 (-) True G136224
TU171190 lncRNA upstream 167317 16704588 ~ 16704813 (-) True G136225
TU171191 lncRNA upstream 172303 16709574 ~ 16711633 (-) True G136226
AMCG00012344 mRNA downstream 20257 16495789 ~ 16510609 (-) True AMCG00012344
AMCG00012346 mRNA downstream 36185 16481950 ~ 16494681 (-) True AMCG00012346
AMCG00012345 mRNA downstream 54664 16446399 ~ 16476202 (-) True AMCG00012345
AMCG00012339 mRNA downstream 90795 16436796 ~ 16440071 (-) True AMCG00012339
AMCG00012340 mRNA downstream 98816 16415107 ~ 16432050 (-) True AMCG00012340
AMCG00012352 mRNA upstream 181491 16718762 ~ 16722047 (-) True AMCG00012352
AMCG00012353 mRNA upstream 227803 16765074 ~ 16773064 (-) True AMCG00012353
AMCG00012359 mRNA upstream 249733 16787004 ~ 16790899 (-) True AMCG00012359
AMCG00012357 mRNA upstream 291763 16829034 ~ 16841186 (-) True AMCG00012357
AMCG00012358 mRNA upstream 305296 16842567 ~ 16852573 (-) True AMCG00012358
TU171094 other downstream 98053 16431352 ~ 16432813 (-) False AMCG00012340
TU171089 other downstream 106966 16418192 ~ 16423900 (-) False AMCG00012340
TU171073 other downstream 216473 16312721 ~ 16314393 (-) True G136125
TU170997 other downstream 303623 16220126 ~ 16227243 (-) True G136070
TU170896 other downstream 605713 15921604 ~ 15925153 (-) True G135988
TU171187 other upstream 161371 16698642 ~ 16699110 (-) True G136222
TU171188 other upstream 162204 16699475 ~ 16699791 (-) True G136223
TU171387 other upstream 556228 17093499 ~ 17133907 (-) True G136378
TU171432 other upstream 664503 17201774 ~ 17203233 (-) True G136412
TU171434 other upstream 671507 17208778 ~ 17211050 (-) False AMCG00012385

Expression Profile