RNA id: TU171150


Basic Information

Item Value
RNA id TU171150
length 333
lncRNA type intronic
GC content 0.53
exon number 1
gene id G136191
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16565899 ~ 16566231 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttctactgactctgagaAACACCagaagaaagatgcccagggtccctgctcatgtGCATGAACGAGCCTTAgacatgctgcaaggaggcatgaggactgcagatgtgggcagggcaataaactgcaatgtccgtactgtgagacgcctaagacagcgctacatgagacaggaaggacagctgatcatcctcgcagtggcagaccacgtgtaacaacacctgcacaggatcggtacatccgaatatcacacctgcgggacaggtacaggacggcaacaacaactgcccgagttacaccaggaacgcacaatccctccatcagtgctcagactgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171136 lncRNA upstream 26750 16538062 ~ 16539149 (+) True G136177
TU170969 lncRNA upstream 369785 16193975 ~ 16196114 (+) True G136051
TU170957 lncRNA upstream 393804 16171739 ~ 16172095 (+) True G136040
TU170940 lncRNA upstream 429184 16131831 ~ 16136715 (+) True AMCG00012324
TU170939 lncRNA upstream 462595 16102894 ~ 16103304 (+) True G136025
TU171156 lncRNA downstream 54024 16620255 ~ 16632264 (+) True G136195
TU171166 lncRNA downstream 77526 16643757 ~ 16648562 (+) False AMCG00012348
TU171207 lncRNA downstream 193622 16759853 ~ 16765108 (+) True AMCG00012351
TU171209 lncRNA downstream 262819 16829050 ~ 16831802 (+) True G136236
TU171211 lncRNA downstream 276336 16842567 ~ 16907105 (+) True G136237
AMCG00012343 mRNA upstream 28654 16530753 ~ 16537245 (+) True AMCG00012343
AMCG00012342 mRNA upstream 48278 16513859 ~ 16517621 (+) True AMCG00012342
AMCG00012338 mRNA upstream 133812 16431673 ~ 16432087 (+) False AMCG00012338
AMCG00012336 mRNA upstream 163702 16400490 ~ 16402197 (+) True AMCG00012336
AMCG00012337 mRNA upstream 186912 16367429 ~ 16378987 (+) True AMCG00012337
AMCG00012347 mRNA downstream 84102 16650333 ~ 16670699 (+) True AMCG00012347
AMCG00012349 mRNA downstream 124591 16690822 ~ 16706193 (+) True AMCG00012349
AMCG00012350 mRNA downstream 147115 16713346 ~ 16715975 (+) True AMCG00012350
AMCG00012351 mRNA downstream 167195 16733426 ~ 16764790 (+) False AMCG00012351
AMCG00012354 mRNA downstream 246554 16812785 ~ 16818439 (+) True AMCG00012354
TU171045 other upstream 133086 16393699 ~ 16432813 (+) True AMCG00012338
TU171007 other upstream 306567 16250248 ~ 16259332 (+) True G136076
TU170961 other upstream 383231 16176399 ~ 16182668 (+) False AMCG00012318
TU170595 other upstream 635051 15911248 ~ 15930848 (+) True G135781
TU170550 other upstream 1002063 15559904 ~ 15563836 (+) True G135744
TU171165 other downstream 77526 16643757 ~ 16648562 (+) True AMCG00012348
TU171182 other downstream 108048 16674279 ~ 16697391 (+) False AMCG00012349
TU171221 other downstream 245475 16811706 ~ 16863593 (+) True G136245
TU171233 other downstream 300306 16866537 ~ 16867448 (+) True G136255
TU171236 other downstream 305607 16871838 ~ 16875600 (+) True G136258

Expression Profile