RNA id: TU171156


Basic Information

Item Value
RNA id TU171156
length 271
lncRNA type intronic
GC content 0.41
exon number 3
gene id G136195
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16620255 ~ 16632264 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTGGGTGTGGCACATGGACACCTGCTGTACCAGCAATTCATAAGTAACATCCCTCTCCTGATCAGAATACACAACTGCCATTATCTCTCCagatggtgtttttaaacatgttagTTTTACTCCTGGGACTGGGTGTGGCACATGGATGCTGTCCAGGAGGTATGTAGATTCACTTACCTAACCATAATTTCTTCCATCTGACAACTGATGTAGTTTCCTTTCCCAAATGGTAAAAGTACAATTATCCCACTGACTTTACTATTATTGAAC

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171150 lncRNA upstream 54024 16565899 ~ 16566231 (+) True G136191
TU171136 lncRNA upstream 81106 16538062 ~ 16539149 (+) True G136177
TU170969 lncRNA upstream 424141 16193975 ~ 16196114 (+) True G136051
TU170957 lncRNA upstream 448160 16171739 ~ 16172095 (+) True G136040
TU170940 lncRNA upstream 483540 16131831 ~ 16136715 (+) True AMCG00012324
TU171166 lncRNA downstream 11493 16643757 ~ 16648562 (+) False AMCG00012348
TU171207 lncRNA downstream 127589 16759853 ~ 16765108 (+) True AMCG00012351
TU171209 lncRNA downstream 196786 16829050 ~ 16831802 (+) True G136236
TU171211 lncRNA downstream 210303 16842567 ~ 16907105 (+) True G136237
TU171268 lncRNA downstream 279971 16912235 ~ 16914695 (+) True G136286
AMCG00012343 mRNA upstream 83010 16530753 ~ 16537245 (+) True AMCG00012343
AMCG00012342 mRNA upstream 102634 16513859 ~ 16517621 (+) True AMCG00012342
AMCG00012338 mRNA upstream 188168 16431673 ~ 16432087 (+) False AMCG00012338
AMCG00012336 mRNA upstream 218058 16400490 ~ 16402197 (+) True AMCG00012336
AMCG00012337 mRNA upstream 241268 16367429 ~ 16378987 (+) True AMCG00012337
AMCG00012347 mRNA downstream 18069 16650333 ~ 16670699 (+) True AMCG00012347
AMCG00012349 mRNA downstream 58558 16690822 ~ 16706193 (+) True AMCG00012349
AMCG00012350 mRNA downstream 81082 16713346 ~ 16715975 (+) True AMCG00012350
AMCG00012351 mRNA downstream 101162 16733426 ~ 16764790 (+) False AMCG00012351
AMCG00012354 mRNA downstream 180521 16812785 ~ 16818439 (+) True AMCG00012354
TU171045 other upstream 187442 16393699 ~ 16432813 (+) True AMCG00012338
TU171007 other upstream 360923 16250248 ~ 16259332 (+) True G136076
TU170961 other upstream 437587 16176399 ~ 16182668 (+) False AMCG00012318
TU170595 other upstream 689407 15911248 ~ 15930848 (+) True G135781
TU170550 other upstream 1056419 15559904 ~ 15563836 (+) True G135744
TU171165 other downstream 11493 16643757 ~ 16648562 (+) True AMCG00012348
TU171182 other downstream 42015 16674279 ~ 16697391 (+) False AMCG00012349
TU171221 other downstream 179442 16811706 ~ 16863593 (+) True G136245
TU171233 other downstream 234273 16866537 ~ 16867448 (+) True G136255
TU171236 other downstream 239574 16871838 ~ 16875600 (+) True G136258

Expression Profile