RNA id: TU171164


Basic Information

Item Value
RNA id TU171164
length 226
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G136203
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16642363 ~ 16642613 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCTTCAAATCGCTTTATTGGCATAAGCTGTGGTgatacaacacaaacacaaggggGTGACATTTCACATAATTCAGCCTCCTCCTGTGTGGTAATGCAAGGCTGTGTTATaggacagtgcagtgtgtgtgtcagtgtgcagggtgtgtgtcagtgtgcagtgtgtgtcagtgtgcagggtgtgtgtcagtgtgcagggtgtgtcagtgtgcagggtgtgagtca

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171145 lncRNA downstream 90082 16552030 ~ 16552281 (-) True G136186
TU171134 lncRNA downstream 105092 16526517 ~ 16537271 (-) False G136175
TU171132 lncRNA downstream 105092 16530866 ~ 16537271 (-) True G136175
TU171128 lncRNA downstream 119915 16519886 ~ 16522448 (-) True G136172
TU171058 lncRNA downstream 350905 16282449 ~ 16291458 (-) True G136112
TU171189 lncRNA upstream 57376 16699989 ~ 16700204 (-) True G136224
TU171190 lncRNA upstream 61975 16704588 ~ 16704813 (-) True G136225
TU171191 lncRNA upstream 66961 16709574 ~ 16711633 (-) True G136226
TU171274 lncRNA upstream 269622 16912235 ~ 16914685 (-) True AMCG00012365
TU171292 lncRNA upstream 313529 16956142 ~ 16956359 (-) True G136307
AMCG00012344 mRNA downstream 131754 16495789 ~ 16510609 (-) True AMCG00012344
AMCG00012346 mRNA downstream 147682 16481950 ~ 16494681 (-) True AMCG00012346
AMCG00012345 mRNA downstream 166161 16446399 ~ 16476202 (-) True AMCG00012345
AMCG00012339 mRNA downstream 202292 16436796 ~ 16440071 (-) True AMCG00012339
AMCG00012340 mRNA downstream 210313 16415107 ~ 16432050 (-) True AMCG00012340
AMCG00012352 mRNA upstream 76149 16718762 ~ 16722047 (-) True AMCG00012352
AMCG00012353 mRNA upstream 122461 16765074 ~ 16773064 (-) True AMCG00012353
AMCG00012359 mRNA upstream 144391 16787004 ~ 16790899 (-) True AMCG00012359
AMCG00012357 mRNA upstream 186421 16829034 ~ 16841186 (-) True AMCG00012357
AMCG00012358 mRNA upstream 199954 16842567 ~ 16852573 (-) True AMCG00012358
TU171094 other downstream 209550 16431352 ~ 16432813 (-) False AMCG00012340
TU171089 other downstream 218463 16418192 ~ 16423900 (-) False AMCG00012340
TU171073 other downstream 327970 16312721 ~ 16314393 (-) True G136125
TU170997 other downstream 415120 16220126 ~ 16227243 (-) True G136070
TU170896 other downstream 717210 15921604 ~ 15925153 (-) True G135988
TU171187 other upstream 56029 16698642 ~ 16699110 (-) True G136222
TU171188 other upstream 56862 16699475 ~ 16699791 (-) True G136223
TU171387 other upstream 450886 17093499 ~ 17133907 (-) True G136378
TU171432 other upstream 559161 17201774 ~ 17203233 (-) True G136412
TU171434 other upstream 566165 17208778 ~ 17211050 (-) False AMCG00012385

Expression Profile