RNA id: TU171189


Basic Information

Item Value
RNA id TU171189
length 216
lncRNA type inter_gene
GC content 0.62
exon number 1
gene id G136224
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16699989 ~ 16700204 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGCAAGCTTCGTCCCACTTCTGAGGTCAACTGTAGAAGAGTTGTGTGCTGCACCTGTGGAGTCCGTCTCGCAGTCCAGCTCAGTCCAGGAATGGGGGGCGGGCTCACCTGTCTCAGCGCGTGGTGCCTGATCATAGTGTCGGCTTTGCTGACGCTGGGCACAGTGGGGGCCGAGCTGGGGGAGAGCGCGGCCTGCTGCTGCAGTCTCTGTTCAA

Function

GO: NA

KEGG:

id description
ko04260 Cardiac muscle contraction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171164 lncRNA downstream 57376 16642363 ~ 16642613 (-) True G136203
TU171145 lncRNA downstream 147708 16552030 ~ 16552281 (-) True G136186
TU171134 lncRNA downstream 162718 16526517 ~ 16537271 (-) False G136175
TU171132 lncRNA downstream 162718 16530866 ~ 16537271 (-) True G136175
TU171128 lncRNA downstream 177541 16519886 ~ 16522448 (-) True G136172
TU171190 lncRNA upstream 4384 16704588 ~ 16704813 (-) True G136225
TU171191 lncRNA upstream 9370 16709574 ~ 16711633 (-) True G136226
TU171274 lncRNA upstream 212031 16912235 ~ 16914685 (-) True AMCG00012365
TU171292 lncRNA upstream 255938 16956142 ~ 16956359 (-) True G136307
TU171379 lncRNA upstream 339133 17039337 ~ 17039966 (-) True G136372
AMCG00012344 mRNA downstream 189380 16495789 ~ 16510609 (-) True AMCG00012344
AMCG00012346 mRNA downstream 205308 16481950 ~ 16494681 (-) True AMCG00012346
AMCG00012345 mRNA downstream 223787 16446399 ~ 16476202 (-) True AMCG00012345
AMCG00012339 mRNA downstream 259918 16436796 ~ 16440071 (-) True AMCG00012339
AMCG00012340 mRNA downstream 267939 16415107 ~ 16432050 (-) True AMCG00012340
AMCG00012352 mRNA upstream 18558 16718762 ~ 16722047 (-) True AMCG00012352
AMCG00012353 mRNA upstream 64870 16765074 ~ 16773064 (-) True AMCG00012353
AMCG00012359 mRNA upstream 86800 16787004 ~ 16790899 (-) True AMCG00012359
AMCG00012357 mRNA upstream 128830 16829034 ~ 16841186 (-) True AMCG00012357
AMCG00012358 mRNA upstream 142363 16842567 ~ 16852573 (-) True AMCG00012358
TU171188 other downstream 198 16699475 ~ 16699791 (-) True G136223
TU171187 other downstream 879 16698642 ~ 16699110 (-) True G136222
TU171094 other downstream 267176 16431352 ~ 16432813 (-) False AMCG00012340
TU171089 other downstream 276089 16418192 ~ 16423900 (-) False AMCG00012340
TU171073 other downstream 385596 16312721 ~ 16314393 (-) True G136125
TU171387 other upstream 393295 17093499 ~ 17133907 (-) True G136378
TU171432 other upstream 501570 17201774 ~ 17203233 (-) True G136412
TU171434 other upstream 508574 17208778 ~ 17211050 (-) False AMCG00012385
TU171433 other upstream 513640 17213844 ~ 17214963 (-) False AMCG00012385
TU171426 other upstream 533724 17233928 ~ 17242827 (-) True G136408

Expression Profile