RNA id: TU171211


Basic Information

Item Value
RNA id TU171211
length 1373
lncRNA type sense_over
GC content 0.44
exon number 2
gene id G136237
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16842567 ~ 16907105 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCCCtgggttgtttattttattgcaaaagaTGTATTGTTTGCCAGAGATtacaacattatgaccacatCTTCCCCCTAGAGGAAATCTGGAACACAGAAACCGATCACAGGGATACGACTGATCACTTTTCATTTGACTTCGTTGTTTCCCGATGCATCGCGTCCGAATCGACTTTAATAAGACCAAAATTTAAGACAGGTagttctttgaaaaataaaagtacagagACAAATAACAAGTCAGcttaaaagattttaaaagacaGATGTAAGGATATACTTAGTGGTCAGAACCTCCTTCTAGCCTAATATTGTGATTCCCATTTCGCCTGCCTGCCTGGACCAATTTAACACCCCCCAGGCTGACAATGGACGGTATCAttccccccccactcccttgGTACTGTGTTACCCTGTGGAAGACACAAACTGAAATGTCGTGTAGAGATCAGAGTGCCAAGGTTCATATTCAATACGCACTGGACTCTGCCTGCAGTACGGACTTCAAACCAAGGAGGAATCTGGGCCTGCAACCTCCTCCCTTGCCCCCCACCAGCCTCCCACAATAAAGAACGTAGAAAACAaagtagcaataataataataataataataataataataataaaaataataaactgcatAGGGTAgttaatctgggtctgtgagaCCTGCCCTCAAATTCAGTTCCCGGAGGGTGACGGTGTCTTcggttttgttgtgttttggttaGTCCCGAGATCAGCAACACTACCAGTGAGTCAAAGGTTCTCGGCAGAGAAAACAGGAATCAGGTCTTTACACCGAGAGTTGCGGGGGCCTGCGTCAAAAGCCCCCAGTCACGTTGTTGGAGCCGACTCCTTAGGGTCATTCAAGGTCAGGCTTGAATGTGGTTCTTGGATCCTTTTTTTTAAGACAAGTTACCGGCTAGCAAACCACTAGTAAACGTTCTGCTATGTCCTTACGTTGTGCTTTTGTTCCAGCCAAGCCCCCAGAGGTCCGTAATAGTTCTGATAAactaattaacatttaataactgCACAATTGTAGGTGGAGTCAACATCAGCCTTATGGCAACTGACTGCAAAAGACCTGAAAACGATGTTAAATGGGTTTTAATTGAGCAAACACTGGATTAAACAAAGTGACTGAAGACCAGTCCACTTGGGATGAAAATCAGAAGACTGGCTCCTGCAGGAACTGAATTTGAGCCCCCTGCCCCATAACGaccctgaaaacaaaaactcattAAGTGTTAAAAACCTATTTTGACCCCGGAATGATTAGCGATGTAGGACAAGTCCACGGGAGACGGAGAGCAGGAGACGGGGGGGCCACTGATGTCACTGAAATAAAGTGCGTCAGTGACATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171209 lncRNA upstream 10765 16829050 ~ 16831802 (+) True G136236
TU171207 lncRNA upstream 77459 16759853 ~ 16765108 (+) True AMCG00012351
TU171166 lncRNA upstream 194005 16643757 ~ 16648562 (+) False AMCG00012348
TU171156 lncRNA upstream 210303 16620255 ~ 16632264 (+) True G136195
TU171150 lncRNA upstream 276336 16565899 ~ 16566231 (+) True G136191
TU171268 lncRNA downstream 5130 16912235 ~ 16914695 (+) True G136286
TU171280 lncRNA downstream 49584 16956689 ~ 16957295 (+) True G136297
TU171278 lncRNA downstream 50353 16957458 ~ 16978213 (+) True G136295
TU171337 lncRNA downstream 220050 17127155 ~ 17209359 (+) False G136341
TU171352 lncRNA downstream 257871 17164976 ~ 17172106 (+) True G136351
AMCG00012354 mRNA upstream 24128 16812785 ~ 16818439 (+) True AMCG00012354
AMCG00012351 mRNA upstream 77777 16733426 ~ 16764790 (+) False AMCG00012351
AMCG00012350 mRNA upstream 126592 16713346 ~ 16715975 (+) True AMCG00012350
AMCG00012349 mRNA upstream 136374 16690822 ~ 16706193 (+) True AMCG00012349
AMCG00012347 mRNA upstream 171868 16650333 ~ 16670699 (+) True AMCG00012347
AMCG00012366 mRNA downstream 70467 16977572 ~ 16984994 (+) True AMCG00012366
AMCG00012369 mRNA downstream 86374 16993479 ~ 16997064 (+) True AMCG00012369
AMCG00012367 mRNA downstream 115554 17022659 ~ 17029088 (+) True AMCG00012367
AMCG00012370 mRNA downstream 135090 17042195 ~ 17051046 (+) True AMCG00012370
AMCG00012368 mRNA downstream 149425 17056530 ~ 17063053 (+) True AMCG00012368
TU171182 other upstream 145176 16674279 ~ 16697391 (+) False AMCG00012349
TU171165 other upstream 194005 16643757 ~ 16648562 (+) True AMCG00012348
TU171045 other upstream 409754 16393699 ~ 16432813 (+) True AMCG00012338
TU171007 other upstream 583235 16250248 ~ 16259332 (+) True G136076
TU170961 other upstream 659899 16176399 ~ 16182668 (+) False AMCG00012318
TU171279 other downstream 56225 16963330 ~ 17000089 (+) True G136296
TU171327 other downstream 218908 17126013 ~ 17129339 (+) True AMCG00012374
TU171339 other downstream 222669 17129774 ~ 17214883 (+) False G136341
TU171331 other downstream 222875 17129980 ~ 17134830 (+) True G136341
TU171333 other downstream 324271 17231376 ~ 17234949 (+) False G136341

Expression Profile