RNA id: TU171236



Basic Information


Item Value
RNA id TU171236
length 671
RNA type TUCP
GC content 0.60
exon number 3
gene id G136258
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16871838 ~ 16875600 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCGTAATGTAGCAGCTCCGGGTGTTGTGGTGGGCTGGTGTGATGTGCCGTAAAGTGCCGTGCAGATGTATGTGTAGTGTTAGTGCAGTACTGTCTGCTGTGACCGTGCAGATCAGAGGACTGTAATCCTGTGTCCTTGACTTTCGGGGCAGCTCTACTCACTGAGGATGCTGGCGGGCTGTGCGGGGGCCGTGGGCGGGGCGCTGCTGGTGGAGCCTGCCGGCGAGGAGCTGACGGCCGGGCTGGGGCTGCCCGGActggcgctgctgctgctgctcacctGGGGGGTGGAGGAACTGGAGGAGGCGGAGGGCTGGGGAGCGGCACCGTCGGCGGCcctggagggaggggggagagagCTTGTGTGCGGTCTTGATGACTAGGTGTACAGTGAGGCCATCCTTGATGCCGTGCTGGTTCAGGGTGTCCCCGTCTTTCAGGATCTTCCCGGCGAAGATAAGCACCAGCTGGTCCTGCTTGGCTTTGAACCTCCGAGAGATCTCCTCTTTAACTGTGTCACCGACGCGTCCTCCCCGATGGCGATCTCCTCTTTGTCCTTCGGGGTTTTCACCGTGACCCTGATAATGTTCCCCTCCGAGGcggtatttttattattgttgttgttcacgGGATCCGTGCTGCTGTTGTCCGCCATCTTTACTCCTCCTATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU171209 lncRNA upstream 40036 16829050 ~ 16831802 (+) True G136236
TU171207 lncRNA upstream 106730 16759853 ~ 16765108 (+) True AMCG00012351
TU171166 lncRNA upstream 223276 16643757 ~ 16648562 (+) False AMCG00012348
TU171156 lncRNA upstream 239574 16620255 ~ 16632264 (+) True G136195
TU171150 lncRNA upstream 305607 16565899 ~ 16566231 (+) True G136191
TU171268 lncRNA downstream 36635 16912235 ~ 16914695 (+) True G136286
TU171280 lncRNA downstream 81089 16956689 ~ 16957295 (+) True G136297
TU171278 lncRNA downstream 81858 16957458 ~ 16978213 (+) True G136295
TU171337 lncRNA downstream 251555 17127155 ~ 17209359 (+) False G136341
TU171352 lncRNA downstream 289376 17164976 ~ 17172106 (+) True G136351
AMCG00012354 mRNA upstream 53399 16812785 ~ 16818439 (+) True AMCG00012354
AMCG00012351 mRNA upstream 107048 16733426 ~ 16764790 (+) False AMCG00012351
AMCG00012350 mRNA upstream 155863 16713346 ~ 16715975 (+) True AMCG00012350
AMCG00012349 mRNA upstream 165645 16690822 ~ 16706193 (+) True AMCG00012349
AMCG00012347 mRNA upstream 201139 16650333 ~ 16670699 (+) True AMCG00012347
AMCG00012360 mRNA downstream 1777 16877377 ~ 16900435 (+) True AMCG00012360
AMCG00012366 mRNA downstream 101972 16977572 ~ 16984994 (+) True AMCG00012366
AMCG00012369 mRNA downstream 117879 16993479 ~ 16997064 (+) True AMCG00012369
AMCG00012367 mRNA downstream 147059 17022659 ~ 17029088 (+) True AMCG00012367
AMCG00012370 mRNA downstream 166595 17042195 ~ 17051046 (+) True AMCG00012370
TU171233 other upstream 4390 16866537 ~ 16867448 (+) True G136255
TU171221 other upstream 8245 16811706 ~ 16863593 (+) True G136245
TU171182 other upstream 174447 16674279 ~ 16697391 (+) False AMCG00012349
TU171165 other upstream 223276 16643757 ~ 16648562 (+) True AMCG00012348
TU171045 other upstream 439025 16393699 ~ 16432813 (+) True AMCG00012338
TU171279 other downstream 87730 16963330 ~ 17000089 (+) True G136296
TU171327 other downstream 250413 17126013 ~ 17129339 (+) True AMCG00012374
TU171339 other downstream 254174 17129774 ~ 17214883 (+) False G136341
TU171331 other downstream 254380 17129980 ~ 17134830 (+) True G136341
TU171333 other downstream 355776 17231376 ~ 17234949 (+) False G136341

Expression Profile