RNA id: TU171268


Basic Information

Item Value
RNA id TU171268
length 2461
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G136286
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16912235 ~ 16914695 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcacttttcaattttttattgtacattataaaaacaaatctccatATTATGCAAGTCATAACATTTTtgctccccagcgatgtggctgaagctgacaatctgggaacatttaaaaatagactggataggatccttggatcactcagttattaatggacaccaaacgggcacaatgggtcgaatggcctcctctcgattggacactttcttatgttcttatgttcttattgtaGCAGTGGGGGAAAATTACCATACGTTGTCTTTGGCATTAAAGTATTGCTTATGTACAGAACCTTGCCTGGCCACCTCTTCCGACCTCTCCAACCTACTGGGGTCCTCCTGCAAACTGGCATAAGAGCAAAGCTAATCAGTATTTAACATGTCTTGGCAAAAGACAGCAGTCACTGTAAATAGATCATTagatccagagagagagagactcctgTCATTCATATGCTGCCCCAGCTTTAGATACAAACACAGAGCAACCTCTTTGTGTAGGGTTTTGTTTCTTCAGTTATTCATATGCTGCCGTTAGCAAGCGGCATTAAAGGGGCACTCGATCACTACAACAGATTGCGGTGTTGAAGGGGTTAAACGGCAGGCACGAGTAATGCAGACACAGGTGGTCAATGCTTGGgagcatacataaataaagctgAATTTCCAGATTGTTTAATTGAACCATTATACtttgtttattgttaaaaaaagaggatacattttagtattttttattaagttgtattattttcagtcttattgtttttagtatttttttaatgatattatATACCCATCACCTCAGTCTGTGCCGGACGCTAGCCGGTACGTATCTGCACCCCATTACGAAAACCTGCACAGGGTGGATAATCAGAGGCTATTATACCTTCCTTAGCCCTAACTGGAGCGCAATATGAAATTCTTCTACCATGAAAGAGTTAATGACTGAACCAAGCCCtccaaagaaaaaactaaatctgctTAAGGTCTAACTGGGATCAGGGCAAACCTATCGGACAATGGTATTGGATAACGAGACCTGGCAGTGAACTGGAGTTGGGTTCAGTGCTCTCCTAGGAGTTTTACGGGAGTTCTGTCAGTTTTACATAAATAGAATGAATGaaagacagacaaaacaaaccgCAAACCATACAATTAGCAGAGAATGGAGTGGTCCAAACATTGGAGTTGCATTCAGAGCCAACATCAAAGCTGCCCAGCCCTTACCACAttaaagagagggggggagagtcTTGGAGGTCGAGCTGGTATTGAAACGCATGCAGGGCATTCAGGAAATGTGGTGGGAGGGGGCACTGGGGTGTAAAGATGTCTCACAACAAGTAAGGAATTCTCAAAGTCTTCCGAAACATCTATTCCGCTTTCACAATTGCATTCCCAAATCCCCAGAAATACCGCACCGATTCACTTCACGACAGGAATGTGTTCAGGACAGTCCGATAAGACACTCacatgccccccctcccccccgtcCCAGAGTATAAACTGTGTTGAGCCAAGGCGGTTTCAAACACTGACAATTGCTTTTATTTGCTTGATCTTTtccaaataattcaaatgaacCGCCTCGTAAAATCTGGTTCagtgcaaaaaacaaatcacacaaaaaacGGACTTCCCAGCAAATAGATTCATCTCCGGTCTTACAGGATACAGGTTGGTGCCGACACGTGTGCAAGAACACATAACATACGAATACCAGGGCCTCtctttttaattcagatttacGGCAAAGAGGTGAAAGTGGGGGCAACAGCCGGCACCCGAGGAATGCTTAAAGCACTACACAGATCACACGGTCACCTAAAGGGAGTCCAAACTGTTTCCTGCTGGCTGCAGTTTTTTAACTGGACCCGGTaagccagggatgagaaggctTTTGTACAAGTGCAATCCCAGAATTCCCCCTCGACCGCAAGAATATCCGTGAGGAAATAGGGCGATAGGGCGGGCAGTAAAAACTGATCAGGCGAAGTCGAGCTTGACGGTGCAATCTGTGAGGGAGATCTAATGCAAACATGAGAGTTATAGCCCTGTGTGGGTGGGGGTGCCGAGGTCGTTATGAAAAGCCCATAGCAGGCTGGCCCCGATGACTGGGAATAGAATTCGGGTGGAAGTGCTGTGGTCGTGGAAAGAAAAGCTTACAGAAATAGGAAGGGGAGGTATTCTATCCCACCAGGCTGGAACAATGCCCTAGTGTCTCTCGCAACAAGTGAAAATTGGATCCGATGCCTGCGGCTGAATCAGAGCGCTGACTCGCTGGAGAGCGAACACCCCCCCTGGCTCAGAACGAGTTTTGGGGGGTAGTTTTAAAGAGGCCAAAAGGGTTTCGATTTCAGCTCTGTACTTTTCAGTACTGTAGCCCCCGAGCTTCGTTTGCAGGGTGTGACCTCAAGAGAAAAGACTTACTCAAGCCTCACAAAGAAACaggtgcccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171211 lncRNA upstream 5130 16842567 ~ 16907105 (+) True G136237
TU171209 lncRNA upstream 80433 16829050 ~ 16831802 (+) True G136236
TU171207 lncRNA upstream 147127 16759853 ~ 16765108 (+) True AMCG00012351
TU171166 lncRNA upstream 263673 16643757 ~ 16648562 (+) False AMCG00012348
TU171156 lncRNA upstream 279971 16620255 ~ 16632264 (+) True G136195
TU171280 lncRNA downstream 41994 16956689 ~ 16957295 (+) True G136297
TU171278 lncRNA downstream 42763 16957458 ~ 16978213 (+) True G136295
TU171337 lncRNA downstream 212460 17127155 ~ 17209359 (+) False G136341
TU171352 lncRNA downstream 250281 17164976 ~ 17172106 (+) True G136351
TU171462 lncRNA downstream 375450 17290145 ~ 17290529 (+) True G136436
AMCG00012360 mRNA upstream 11800 16877377 ~ 16900435 (+) True AMCG00012360
AMCG00012354 mRNA upstream 93796 16812785 ~ 16818439 (+) True AMCG00012354
AMCG00012351 mRNA upstream 147445 16733426 ~ 16764790 (+) False AMCG00012351
AMCG00012350 mRNA upstream 196260 16713346 ~ 16715975 (+) True AMCG00012350
AMCG00012349 mRNA upstream 206042 16690822 ~ 16706193 (+) True AMCG00012349
AMCG00012366 mRNA downstream 62877 16977572 ~ 16984994 (+) True AMCG00012366
AMCG00012369 mRNA downstream 78784 16993479 ~ 16997064 (+) True AMCG00012369
AMCG00012367 mRNA downstream 107964 17022659 ~ 17029088 (+) True AMCG00012367
AMCG00012370 mRNA downstream 127500 17042195 ~ 17051046 (+) True AMCG00012370
AMCG00012368 mRNA downstream 141835 17056530 ~ 17063053 (+) True AMCG00012368
TU171236 other upstream 36635 16871838 ~ 16875600 (+) True G136258
TU171233 other upstream 44787 16866537 ~ 16867448 (+) True G136255
TU171221 other upstream 48642 16811706 ~ 16863593 (+) True G136245
TU171182 other upstream 214844 16674279 ~ 16697391 (+) False AMCG00012349
TU171165 other upstream 263673 16643757 ~ 16648562 (+) True AMCG00012348
TU171279 other downstream 48635 16963330 ~ 17000089 (+) True G136296
TU171327 other downstream 211318 17126013 ~ 17129339 (+) True AMCG00012374
TU171339 other downstream 215079 17129774 ~ 17214883 (+) False G136341
TU171331 other downstream 215285 17129980 ~ 17134830 (+) True G136341
TU171333 other downstream 316681 17231376 ~ 17234949 (+) False G136341

Expression Profile