RNA id: TU171278


Basic Information

Item Value
RNA id TU171278
length 4998
lncRNA type sense_over
GC content 0.44
exon number 4
gene id G136295
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16957458 ~ 16978213 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCACGATGAGGTGGTACAACAAGGTttactgaacaaaaaaataagcattttctgGAAGGAAATAAACCAATCATTCCTCTGTATCTCCTATTGAGTGATTAAGTGCTTCCATTTGTATTCCAAAGTGCATTCtaataagaagaaaatgtacaacaacacacagaaacatcacTGACCAAgatcacagagagagacagtgaagagcacacaatgaagacaaataaaaacacatgcatagTACAATTCAGTTTTAAGTAGTGTCCCGGGAGTCAAAATGGACATGTaatatgacacattttaaagggCAAATTCTGCATTCACAACATATAGACAGGAGGCACTCTTGGCATGGTAGGGTCTAGTTTTTGTGTCTTAGGTCGACTATAATAAAAGGCCTTCCCAGTGCAAAGGCTGCTCAGATCTAACGCCAGGATGGATCTCTCACGttggaaagaaattaaataatctcACTCTACAAGGCCTCAAACTTAAGTTAAAGTGAAAGAGTATGTGTGAAAGCtgttttgaaaaacagacaaacaataaaaaaactttcTTTGGCCAACTTGCTCTTTCAAAATCAATAGGTAAGGGCAAGCTGTGAACTGGAACGACTACCGTGTTCAATTCTGCAGGCATGTCGGGCCGCAGGTTTCAGACTGGCCCCAATGTCGTGTTTTAACCGGCGACAGCACTAGTGTAAACAAATCAGTGTTACCAAGGAACAAGGATGCAAATAATCAAAGGTTATGTATACAGCGAGCATCCCTTCCCTGGAAATCTACCCTTTGCGGTTCAGCCgtgaaggtttttctttttctttctacttCAGAGCCCTTGTACAGACTCCATAGTGAGGCACAGACTACACTGGACATTGTGAACTGATAGGATTTAATATTTATCTAGTGGTTACGATGTAATGAGGTTAAAGGATAAGACTGTCCTGTTTTTTgggtttatttcaaaatatctatTTCCTCATTATAACATCTTAAGACAGTCACGTTTCTCAAACTCATGCTGCATTAACAGGAGACAGCAAACAATGACTGCACTAGCGAGATTTCAAAAAAGAACCAAGACATGAAagtgcagatttaaaaaaaaaatacctctATCGTGCCGGGGTGATTATATTTCAACAGCTCTTATAAATCGGATGGATTTTCAGCAATACGACGTAGatagtttattttaagtgtaGTGTAAGAGTATATAAGATTATAATACATTCAGTTTCCTATGCAAAACATATTGGTGTGACTTAGTCAAAGCATAACAGAAGTTAAAGAACAAGAGATTTCAACAGAACTGCAGTTTGTAGTGAATATCTAGAACTGGGAATCAGACTCAATTCAACATCGGAACCATCAGGACAGTTTAAAAAGGTCTACTAAATGACTACAGCTTTTTTCCTCTGAAGAAGATTGCATCGGTATTCCAGGATGCAATCTCTTTCAGTTTCCAGTCCAGTCTGGTTTCGATATTACGCTTCACTTGCGCAATATcgtaatttttttattgattttgagAATGTAGTGTACATCTAGTGGGGcctttgttattattctgtcatTAAGAGCCACATAACGAAGGAGAGGTTTTTGtagtgttttagttttaaacttCCCTAGCCACACAAAAGATATACGTCAACAAGAAGCCAGTGCAAATCAGGTCAATAAAGAGATCTACACATGGAactgcatattcatatttttcagagCTTTGTAACGGTTTcctttttgctgttttgttgcCCAACAGAAGAGGCGTCACACAGTTTTGCACAAAGTGATGGCTGCTTTGTTCAAATTAGTGTTACAGAGATATACTGTCACACAGCCTCACACTCAGATGACACAACGGGGTTAGTGTTTGTAGGGATGAATAGCTTACAATGAACAAACACGCCAGAGCTCCGAAGAGCATCCGTTTCAGTTTCTGTgtgcagaggaagaggaggcaaGCACTTTCCCCCAGCAGTGTGAAGAAACGTGTTCAAAACGGCTGGCGAGTTTCCTAAAGCAGACGGATTCGTAGTGCTGTTTGGTAATAAACTACCAGCATCAGGCTATATTCAACAGATCAGAAACATGAGACTCGGAGATTTGGTTACATACTGAGAGAAGGCAGAGACTGGCTGCTTTGGAGGAGTAATTCAGATCATTGGCCGTTTCCTGTCATTATCGTTCGCTCTGGATGGCATGTTTTAATTGGAGTGTCCGCTCAGCCAGGTTTTCTCAGTGTTTACTGGCAGGAAGTCGACAAGGGAATTAATCTGTGGCGCACAGTGCTTTTTGGCTCGTTCGTAAAGCACTGAGGTCCAACTTGGGACAAATGGTCTGGAGAAAAGAGGCATATTTCAATGTCTGAAGGCTAGTATGAGACCTGTTCTTTTAATAGATGTGTTGAGTGCAAATCCCAACTGGAAGGAGCCCTAGTGTTCAGATTGTGGAGTATTAGGAATCCGTGACCTCTGTTGATCACGTGAAACTATAGACTACCTGGAAGTCTGGCGAAATTGAACTGGTTTCggttcaaaatgtataatgcatcCTAATGACtgtcaaaatgtgtatttcccaTAATGCAAAGCAGGCTCTGAGACATAGTTAATTAGTccataaagtattttctttggGGGGTGGGCGGTGGGAAGCTAAATTACTGATGAATCGAGAAACACGCCAATGGTGTAAACTACTCCGTCACAAGCTGTCATCTGTAAAGACCCTCGCTCACCCTTGGATTCCTAGAAAAGCTTTCctaacagctttttttttttagcttttaacAGCCTCTCCTGTGCTGTAAAAAGTGGGCGGGCGCTCAGGAAAGGGAGAGGGGTGGGAGCGGTGGGGCGGTGGCGGTTACATTCTCAGTTCTGAGAGGgacggtggggggggggggtatccAGATCACTTGCACATCCTCAGCACCTCCTGCATGCGCCTCTGCACGTCCTCCATCTTCTCGGTCCACTCTTCGCTCAGCCCCTCCTCGTCGTCGCCCACCACGGCCGCGTAGCCCATGAGTGCGATCAGCCCGATGCAGAACAGGTAGGTGAGCCGGGTGCAGAGGCGCTCCATGGCCCTGCGGTCCCCCCCCGAGTGCTTCATGTACACCTCCAGGATGGGCTTGCTGAAGAGCTTGGGTTTGCCCATGACGCCGTCGTACAGCGAGTGCAGGTTCTGGTCGCCCAGGTCGTTGCTGTAGCTCTCCTCGAAATCCTCCCTCTTGCGGCCCTGCAGTCGGACCTGAAAGGACAGCCGGGAAGAGACAGGTCACTGACCGTGTACCGGGATCAACGCAAGGGACTGCACTGTCAGTTGGCAGAACAGTGAACCCATGCATTCAACATATACAATGCAGAGGACAGTGTGTGATGTAAATACAACTGAAAACTCATTTCTGTGCCTATCTTTTTACATTTAGTGATTTTgtcaaaacagcaacaaattaAAGAATTGTTAAGCATTATCAATAAAGGAAAGGTAGGTTTAGTCAGTAACTTGTCGAAAATACAGAGAACTGAATAGGGTTAATGCAGCCTTGATCTCTTACAGCGATGTCAGTCAGGGAGAACTGAACTACAAAAACATGTCATACTTAGACATACTTTGCCTGGAATTACTACAGTAACCCCCTTAAGTGCAGGGATGACTGTAAACAGACCGTATGCAGGGATGTGCAAGACACAGAGACGTAGTCCGGCCACACCTCTGTCATTAGTCGTGTTTACTACGGTTCTCCCTGCTCGCGTTTATCTCGTGGATGTGGCTAACGATGTTGTGAAATGTCTCTCGTGTCACTTTTGGTGAGTGTCTTCAGACCTCCTGATTTTAGCACAAGGGCTGTTCTCAGTTACAGAggctctttctgtgtgtgtcagtaaaaaaaaaaaaaaaaaggaaaaaaaagactgcattgcagtaaaatgaaaaagaggaGCAGCTTTTCTGTAACAAACAACAGTGAACTACTTATGATAGAGCACACGAGTATAGGAAATGGATATTACATGGATATAGatgtaaatacatatgaaaaacaGCTAGACATGCACTCAGAGACAATATAATGGCTTATCCTTCTCTTTCTCATCCTACAATACCAGTTCTGATCTCTCAGGAGTCTCATTCATCTCGACATTGTCTGAGGATTTACGTCCTGTTTGCTGTATTTGTGCTGCATCATCAAGCAAAGCTTCTAGGCCCGATTTAGTGTCACAgaaatggatacatttaatcatttaacgTGTACAAGATGCATAAATCCACAGCTCGGTGTGATGACTTACCTGCGAGTTCGGTTCTTCTGTCACTTCCTACAAGATCTGTTGTTTTGTGCTACCAGCCACCATTTCACTCCCAACTGCCCCTGTCAGGCCTCGCCTCTATACCATACTTAGCTCGGGGAAGAGGAAGTGACTCACAGGGAGCGCTACAGCGATTGGGTTAGAAGAATGCTGTCAGCCAGCAATCCACAGAGCCGAGGCACCGCCTTCTCAACGTGAGGGAGGACAAGCAGGACAGGCAGGATCTATCAGACAGACCTCTGTGGATTCAGATAATCCAGGCCTTGCCATTTACCGTTGATAAAGGCCACGCGTTAGCTGGCTTGATTCTGCAGGTGTCCTCGGAGGGAGAGATGAGTGGATGTGTCGGTATCGGGGAGGTGGTTGATGTCTTTTTTGGGAGAGCGTCACCCTGGGGAGATGGAGGAGAATAGgcccTGGATGTCTGTGTTTTAACAAAGGCATATTTCGTTGTTGCACCTGTGAACCAGAAAAATCTTCATGAAGGGAATGCAAGTATAAACGAATCGAGATCAGAGCTCTAATTCTCTGAACATATTGTGTGCGGTCTGTCAGACTGCGCCagattacattcatatttgtattgcgGTTCACAGAATCTCTAATAAAAGTCGGTTAAAGAGAGTTGTCGGTCTCTTTTATTGTGTTTGCTGGTACCTTTCTTTAGTACGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171280 lncRNA upstream 163 16956689 ~ 16957295 (+) True G136297
TU171268 lncRNA upstream 42763 16912235 ~ 16914695 (+) True G136286
TU171211 lncRNA upstream 50353 16842567 ~ 16907105 (+) True G136237
TU171209 lncRNA upstream 125656 16829050 ~ 16831802 (+) True G136236
TU171207 lncRNA upstream 192350 16759853 ~ 16765108 (+) True AMCG00012351
TU171337 lncRNA downstream 148942 17127155 ~ 17209359 (+) False G136341
TU171352 lncRNA downstream 186763 17164976 ~ 17172106 (+) True G136351
TU171462 lncRNA downstream 311932 17290145 ~ 17290529 (+) True G136436
TU171471 lncRNA downstream 322314 17300527 ~ 17304999 (+) True G136444
TU171485 lncRNA downstream 352581 17330794 ~ 17332570 (+) True G136457
AMCG00012360 mRNA upstream 57023 16877377 ~ 16900435 (+) True AMCG00012360
AMCG00012354 mRNA upstream 139019 16812785 ~ 16818439 (+) True AMCG00012354
AMCG00012351 mRNA upstream 192668 16733426 ~ 16764790 (+) False AMCG00012351
AMCG00012350 mRNA upstream 241483 16713346 ~ 16715975 (+) True AMCG00012350
AMCG00012349 mRNA upstream 251265 16690822 ~ 16706193 (+) True AMCG00012349
AMCG00012369 mRNA downstream 15266 16993479 ~ 16997064 (+) True AMCG00012369
AMCG00012367 mRNA downstream 44446 17022659 ~ 17029088 (+) True AMCG00012367
AMCG00012370 mRNA downstream 63982 17042195 ~ 17051046 (+) True AMCG00012370
AMCG00012368 mRNA downstream 78317 17056530 ~ 17063053 (+) True AMCG00012368
AMCG00012374 mRNA downstream 149599 17127812 ~ 17129154 (+) False AMCG00012374
TU171236 other upstream 81858 16871838 ~ 16875600 (+) True G136258
TU171233 other upstream 90010 16866537 ~ 16867448 (+) True G136255
TU171221 other upstream 93865 16811706 ~ 16863593 (+) True G136245
TU171182 other upstream 260067 16674279 ~ 16697391 (+) False AMCG00012349
TU171165 other upstream 308896 16643757 ~ 16648562 (+) True AMCG00012348
TU171327 other downstream 147800 17126013 ~ 17129339 (+) True AMCG00012374
TU171339 other downstream 151561 17129774 ~ 17214883 (+) False G136341
TU171331 other downstream 151767 17129980 ~ 17134830 (+) True G136341
TU171333 other downstream 253163 17231376 ~ 17234949 (+) False G136341
TU171338 other downstream 253163 17231376 ~ 17264404 (+) False G136341

Expression Profile