RNA id: TU171331


Basic Information

Item Value
RNA id TU171331
length 2365
RNA type TUCP
GC content 0.46
exon number 3
gene id G136341
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17127155 ~ 17264404 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctctctccctacTCCCCCCCAGCACACACCCTTTTACTAAATACAAGGAAAAAGTTTGCCTGACGGAAGGGGATAAGGCAGATATAATAGGCACAGGCGAGTCACACACAGAGTCGAGGATCCATACTAAAAGAGTCGCCCCAAGAAACACCGTGCAAACAGAAGGACAGAAAACGAGACACCAGTCGCTGTTCAGTGAAGCTTGCCAGCCGTCCCTCTGTCCAGTCCGTCCGCCTGTCCGTCCCGCAGCAAGAGATGGAGTCTGCCATTATGACCATAGTGAAAGTGTTCCAGAGCGCCTCCAAGGGCCGTGACTCGATGGGGGGCAAAGACTTCCAGAAAATGGTGCATAGCCAGCTGGGCAACATCCTAACGgacacAGACAGTAAAAAGGCCGTGAATGAGATGAAGGAGGGTCTGGACGACAATAAGGACGGGAAAGTGAGTTTCCCCGAGTTCATGACGCTGATCGGCTACATCGCCAATACCCTGAGCGAGCAGCGCTCCGCGGCCACCCAGCAGCCCGAGACCCAGGGCTGACGCAGCCAAGACGCAGCCAAGACGCACCGGACACATGTCAAGACACCCGAGACAGGGCCGAAACAACTGATACACACCTGACACCCCTAACTCGCATCATACACCattgacacactgcacactgttaCACACCTAACAACAATGTCCTCACTACGAGACTACAGCGAACACTGTCACTGCAGTAACGTGACAACACAACACTACAgcaaacacagcacaacactgtcCCCACTACAACACTACAgcaaacacagcacaacactgtcCCCACTACAACACTACAgcaaacacagcacaacactgtcCCCACTACAACACTACAGCAACACGGTGCAAAACAGTGTCACTGCAGTAAACATGACAACACAACACTACAACAACACTGTGCAAAACAGTGTCAACGCAGTAACAACACTACAGTGAAAACAACGCTTTTGACTTTTGTTGCTCTGAGAAATCTTAACTCTTCCCATCTGATCCTGCCGTTCTTGGCATAATGTTGTCTTTATATACCTTtgcccaaacaaacaaacaaaccgaaGACATTGTTACAGACGAAATGTGTCGCCTACCTTGTACTCTATGCTTATGCCCTGTAATGCCCTCATGCCATTTCTGCTTCACCGGCAGCGGTGGACTGGTGCTCAGTTACTGCTGCCGGCTGCTGGCGAGAATGACGGCGGtaataaagagaaacaaaagcaatggTCTCCAAAGtggcttgctttttttttttcttcacacttGGACAGATTAGACCCGCATGGCTGACGCTGCCTGACAGGTGCCTGTGTCACACCTGCAGGAGCTGGTCAACCCTGCAGCGGCCCGGCCCTGGGGTAtgagagtggagagagaggggctaaTACACCCAGAGAGGGAGACGGGCATTAATATTGATATAcccagagaaagaaagagaaagacaggttaatacacagaaagagagaggggttaatatactcagagagagaaagaggggttaatacacccagagagagagagagagagagacaggggttAATATACCCAGACAGAGACAATGTGACTAATCTCCATATTCTggtaatgcatgttttaaatgtgtgtcaaCCAAATAAACTTAAGCCGTGGGTTAGCTTAGTTCTCGTGTCAGTAGTGTAGAAAACTGCAAACGAATCCGGCTGGGCGATATTATCTTACTTACacacatgttttattaatcgGCAACATCATTACAAAGGCTCagcaataacagaaaacaaagtaatatgCCAGTCTGCTATAAActgcataataatacatataaatcaaGTGGAAGCTCAGTAGAGATCGCTGTGCACTCCACAACACTGTAAAACCAATTAGCTTCATTATAACCATTCACAAAACTAACAGCATTTAATTATGTACTTTAATTGAGATTACCTTCCAATATATATCAATTCTACCCATACTATACATACTACATACCATACTTCAGTAATGTTTAattgttggtatgtagtacgtgtagtatgggtagtatgtGATTTCAAATACAGCCTGGGTTTCATAATAACTCCCACCTTACAGTTCAGATCTGtgccagagagacagagagaaagagagagagagtgtaataCACCCGAACAGAAAGAGGGATTAATatacccagagagagagaagcacatACATAGAGAGAGGGCTTTAAGGAGTGTGACAGGGAGAAACACCAGGAGGAGTATGGAGGAAAGGAGGTATAGATGtttataaagagagagagatcacaTATGTGGTGAAGACTCTGTTCCCTTCTTGAGAAAGCAGTTGAAGTTCCagcacagtaaataaatacttgtacat

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171278 lncRNA upstream 151767 16957458 ~ 16978213 (+) True G136295
TU171280 lncRNA upstream 172685 16956689 ~ 16957295 (+) True G136297
TU171268 lncRNA upstream 215285 16912235 ~ 16914695 (+) True G136286
TU171211 lncRNA upstream 222875 16842567 ~ 16907105 (+) True G136237
TU171209 lncRNA upstream 298178 16829050 ~ 16831802 (+) True G136236
TU171352 lncRNA downstream 30146 17164976 ~ 17172106 (+) True G136351
TU171462 lncRNA downstream 155315 17290145 ~ 17290529 (+) True G136436
TU171471 lncRNA downstream 165697 17300527 ~ 17304999 (+) True G136444
TU171485 lncRNA downstream 195964 17330794 ~ 17332570 (+) True G136457
TU171486 lncRNA downstream 204748 17339578 ~ 17340736 (+) True G136458
AMCG00012374 mRNA upstream 826 17127812 ~ 17129154 (+) False AMCG00012374
AMCG00012368 mRNA upstream 66927 17056530 ~ 17063053 (+) True AMCG00012368
AMCG00012370 mRNA upstream 78934 17042195 ~ 17051046 (+) True AMCG00012370
AMCG00012367 mRNA upstream 100892 17022659 ~ 17029088 (+) True AMCG00012367
AMCG00012369 mRNA upstream 132916 16993479 ~ 16997064 (+) True AMCG00012369
AMCG00012376 mRNA downstream 24615 17159445 ~ 17168083 (+) True AMCG00012376
AMCG00012380 mRNA downstream 50400 17185230 ~ 17193976 (+) True AMCG00012380
AMCG00012381 mRNA downstream 61609 17196439 ~ 17198701 (+) True AMCG00012381
AMCG00012378 mRNA downstream 86553 17221383 ~ 17222414 (+) True AMCG00012378
AMCG00012382 mRNA downstream 96515 17231345 ~ 17234934 (+) True AMCG00012382
TU171327 other upstream 641 17126013 ~ 17129339 (+) True AMCG00012374
TU171279 other upstream 129891 16963330 ~ 17000089 (+) True G136296
TU171236 other upstream 254380 16871838 ~ 16875600 (+) True G136258
TU171233 other upstream 262532 16866537 ~ 16867448 (+) True G136255
TU171221 other upstream 266387 16811706 ~ 16863593 (+) True G136245
TU171333 other downstream 96546 17231376 ~ 17234949 (+) False G136341
TU171338 other downstream 96546 17231376 ~ 17264404 (+) False G136341
TU171552 other downstream 324654 17459484 ~ 17466059 (+) True G136499
TU171527 other downstream 339818 17474648 ~ 17476097 (+) False G136489
TU171630 other downstream 382620 17517450 ~ 17518398 (+) False AMCG00012401

Expression Profile