RNA id: TU171339


Basic Information

Item Value
RNA id TU171339
length 2276
RNA type TUCP
GC content 0.51
exon number 5
gene id G136341
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17127155 ~ 17264404 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGACTCTTAACAGCCCGTGAGTGAGGCCCGTGCCCGACTGCGGCTGCGCAGGAACGCCATCCCCGGGCAGCCGCGCACGAACTCGTTCCACAGCTCGTGCAGCAACACGCCCTCGAGCCCGGCCTGCCGTGCGTCCCGCAGccggatctctctctctctccctctctcctccccctctctctctccctctctccctctctcctccccctctctccctacTCCCCCCCAGCACACACCCTTTTACTAAATACAAGGAAAAAGTTTGCCTGACGGAAGGGGATAAGGCAGATATAATAGGCACAGGCGAGTCACACACAGAGTCGAGGATCCATACTAAAAGAGTCGCCCCAAGAAACACCGTGCAAACAGAAGGACAGAAAACGAGACACCAGTCGCTGTTCAGTGAAGctTCTCTCCGCCCACTCttttttcctgtctctctgtcctaCAGCTTGCCAGCCGTCCCTCTGTCCAGTCCGTCCGCCTGTCCGTCCCGCAGCAAGAGATGGAGTCTGCCATTATGACCATAGTGAAAGTGTTCCAGAGCGCCTCCAAGGGCCGTGACTCGATGGGGGGCAAAGACTTCCAGAAAATGGTGCATAGCCAGCTGGGCAACATCCTAACGgacacAGACAGTAAAAAGGCCGTGAATGAGATGAAGGAGGGTCTGGACGACAATAAGGACGGGAAAGTGAGTTTCCCCGAGTTCATGACGCTGATCGGCTACATCGCCAATACCCTGAGCGAGCAGCGCTCCGCGGCCACCCAGCAGCCCGAGACCCAGGGCTGACGCAGCCAAGACGCAGCCAAGACGCACCGGACACATGTCAAGACACCCGAGACAGGGCCGAAACAACTGATACACACCTGACACCCCTAACTCGCATCATACACCattgacacactgcacactgttaCACACCTAACAACAATGTCCTCACTACGAGACTACAGCGAACACTGTCACTGCAGTAACGTGACAACACAACACTACAgcaaacacagcacaacactgtcCCCACTACAACACTACAgcaaacacagcacaacactgtcCCCACTACAACACTACAgcaaacacagcacaacactgtcCCCACTACAACACTACAGCAACACGGTGCAAAACAGTGTCACTGCAGTAAACATGACAACACAACACTACAACAACACTGTGCAAAACAGTGTCAACGCAGTAACAACACTACAGTGAAAACAACGCTTTTGACTTTTGTTGCTCTGAGAAATCTTAACTCTTCCCATCTGATCCTGCCGTTCTTGGCATAATGTTGTCTTTATATACCTTtgcccaaacaaacaaacaaaccgaaGACATTGTTACAGACGAAATGTGTCGCCTACCTTGTACTCTATGCTTATGCCCTGTAATGCCCTCATGCCATTTCTGCTTCACCGGCAGCGGTGGACTGGTGCTCAGTTACTGCTGCCGGCTGCTGGCGAGAATGACGGCGGtaataaagagaaacaaaagcaatggTCTCCAAAGtggcttgctttttttttttcttcacacttGGACAGATTAGACCCGCATGGCTGACGCTGCCTGACAGGTGCCTGTGTCACACCTGCAGGAGCTGGTCAACCCTGCAGCGGCCCGGCCCTGGGGTAtgagagtggagagagaggggctaaTACACCCAGAGAGGGAGACGGGCATTAATATTGATATAcccagagaaagaaagagaaagacaggttaatacacagaaagagagaggggttaatatactcagagagagaaagagggACGGGGGGtggtgtctctctttctctcacattCGCTTGGCCATCATGCCGATCAGAGTGCCGAACTCCACGATGTCGATCTGTCCATCCTTGTTGTTATCCAGACGTTTCATCACCTCGCTCAACTTTGAACTGCAGTCTGTTccctacagacacacacacagacgtacataatattattgttgattatgatgatgattaatattattattataattatcattatgattttgattatgattattagtgGGGAGACTCACCTTCTTGCTGCACTCAGCCTTCAGCAGTTTCTTGAGCTCATCTGGGCTCAGCGTGTCCTTCTGCTGGTCCTCAGAGGCGTACTTCTTGAACACCTCGGACACGATGCGCACAGCGTCAGTCAGAGACATGGTCAGTGTAGGAATGAGAAAAGCTGGTTGTGTTAGTGAGACTCGCTCTGTCCTGCGTTATATATAGCTCTGAGCGCTAGGGAGGGGAAGGGAGGTTGGAGTGGGGATCCTCCTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171278 lncRNA upstream 151561 16957458 ~ 16978213 (+) True G136295
TU171280 lncRNA upstream 172479 16956689 ~ 16957295 (+) True G136297
TU171268 lncRNA upstream 215079 16912235 ~ 16914695 (+) True G136286
TU171211 lncRNA upstream 222669 16842567 ~ 16907105 (+) True G136237
TU171209 lncRNA upstream 297972 16829050 ~ 16831802 (+) True G136236
TU171462 lncRNA downstream 75262 17290145 ~ 17290529 (+) True G136436
TU171471 lncRNA downstream 85644 17300527 ~ 17304999 (+) True G136444
TU171485 lncRNA downstream 115911 17330794 ~ 17332570 (+) True G136457
TU171486 lncRNA downstream 124695 17339578 ~ 17340736 (+) True G136458
TU171518 lncRNA downstream 170053 17384936 ~ 17388799 (+) False AMCG00012387
AMCG00012374 mRNA upstream 620 17127812 ~ 17129154 (+) False AMCG00012374
AMCG00012368 mRNA upstream 66721 17056530 ~ 17063053 (+) True AMCG00012368
AMCG00012370 mRNA upstream 78728 17042195 ~ 17051046 (+) True AMCG00012370
AMCG00012367 mRNA upstream 100686 17022659 ~ 17029088 (+) True AMCG00012367
AMCG00012369 mRNA upstream 132710 16993479 ~ 16997064 (+) True AMCG00012369
AMCG00012378 mRNA downstream 6500 17221383 ~ 17222414 (+) True AMCG00012378
AMCG00012382 mRNA downstream 16462 17231345 ~ 17234934 (+) True AMCG00012382
AMCG00012379 mRNA downstream 23397 17238280 ~ 17242829 (+) True AMCG00012379
AMCG00012377 mRNA downstream 40529 17255412 ~ 17258599 (+) True AMCG00012377
AMCG00012389 mRNA downstream 54183 17269066 ~ 17289895 (+) True AMCG00012389
TU171327 other upstream 435 17126013 ~ 17129339 (+) True AMCG00012374
TU171279 other upstream 129685 16963330 ~ 17000089 (+) True G136296
TU171236 other upstream 254174 16871838 ~ 16875600 (+) True G136258
TU171233 other upstream 262326 16866537 ~ 16867448 (+) True G136255
TU171221 other upstream 266181 16811706 ~ 16863593 (+) True G136245
TU171333 other downstream 16493 17231376 ~ 17234949 (+) False G136341
TU171338 other downstream 16493 17231376 ~ 17264404 (+) False G136341
TU171552 other downstream 244601 17459484 ~ 17466059 (+) True G136499
TU171527 other downstream 259765 17474648 ~ 17476097 (+) False G136489
TU171630 other downstream 302567 17517450 ~ 17518398 (+) False AMCG00012401

Expression Profile