RNA id: TU171379


Basic Information

Item Value
RNA id TU171379
length 630
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G136372
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17039337 ~ 17039966 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGAATTGGGAAGGGATTGAAGGGGAGGAGGGTGATCAGTTATCCCAGGCATTTACACTACACCaggctaccttcagacactcgtctctccatacatcccctccagaccactgcgctcctccagtgccagaagactaactctgcctcctctccactctccttcctccagagccgctccttctcatccctgacccctaagtggtggaacgacctgcccaccgaagtcaaaaccgccgagtccttgacctcattccggcgcttactcaagacgcatctcttctgacagcacttgtaatattagtcctctatccctgctagatagcacttcagcttattatgctcctcgcgttcttgattgttttcctccttgctccctttcccgtagcccttgtctgtgacctgacatcttgacagcactgagctttcaccgtccaggatgcaggacctcacttactgtacttgtgtaaattgtaattggaatttgtaaaatgtattattttgaattgctatgttttagctaagttgaatttgtaatgatttgatgccttgtacttctctgtatttttgcacttatgttgtaagtcaccctggataagggcatctgccaagaaataaaaataatataaacgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171292 lncRNA downstream 82978 16956142 ~ 16956359 (-) True G136307
TU171274 lncRNA downstream 124652 16912235 ~ 16914685 (-) True AMCG00012365
TU171191 lncRNA downstream 327704 16709574 ~ 16711633 (-) True G136226
TU171190 lncRNA downstream 334524 16704588 ~ 16704813 (-) True G136225
TU171189 lncRNA downstream 339133 16699989 ~ 16700204 (-) True G136224
TU171383 lncRNA upstream 16646 17056612 ~ 17057001 (-) True G136376
TU171385 lncRNA upstream 24590 17064556 ~ 17098725 (-) True AMCG00012372
TU171391 lncRNA upstream 52577 17092543 ~ 17093357 (-) True G136382
TU171392 lncRNA upstream 62437 17102403 ~ 17103055 (-) False G136383
TU171394 lncRNA upstream 62437 17102403 ~ 17104457 (-) True G136383
AMCG00012371 mRNA downstream 49228 16985862 ~ 16990109 (-) True AMCG00012371
AMCG00012364 mRNA downstream 73466 16960383 ~ 16965871 (-) True AMCG00012364
AMCG00012361 mRNA downstream 87506 16945305 ~ 16951831 (-) True AMCG00012361
AMCG00012362 mRNA downstream 115353 16922806 ~ 16923984 (-) True AMCG00012362
AMCG00012363 mRNA downstream 122641 16915521 ~ 16916696 (-) True AMCG00012363
AMCG00012372 mRNA upstream 25371 17065337 ~ 17079207 (-) False AMCG00012372
AMCG00012373 mRNA upstream 40941 17080907 ~ 17082207 (-) True AMCG00012373
AMCG00012385 mRNA upstream 168849 17208815 ~ 17217639 (-) True AMCG00012385
AMCG00012384 mRNA upstream 206124 17246090 ~ 17254514 (-) True AMCG00012384
AMCG00012383 mRNA upstream 224797 17264763 ~ 17267311 (-) True AMCG00012383
TU171188 other downstream 339546 16699475 ~ 16699791 (-) True G136223
TU171187 other downstream 340227 16698642 ~ 16699110 (-) True G136222
TU171094 other downstream 606524 16431352 ~ 16432813 (-) False AMCG00012340
TU171089 other downstream 615437 16418192 ~ 16423900 (-) False AMCG00012340
TU171073 other downstream 724944 16312721 ~ 16314393 (-) True G136125
TU171387 other upstream 53533 17093499 ~ 17133907 (-) True G136378
TU171432 other upstream 161808 17201774 ~ 17203233 (-) True G136412
TU171434 other upstream 168812 17208778 ~ 17211050 (-) False AMCG00012385
TU171433 other upstream 173878 17213844 ~ 17214963 (-) False AMCG00012385
TU171426 other upstream 193962 17233928 ~ 17242827 (-) True G136408

Expression Profile