RNA id: TU171386


Basic Information

Item Value
RNA id TU171386
length 1616
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G136378
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17093499 ~ 17133907 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCAATATTAATGCCCGTCTCCCTCTCTGGGTGTAttagcccctctctctccactctcaTACCCCAGGGCCGGGCCGCTGCAGGGTTGACCAGCTCCTGCAGGTGTGACACAGGCACCTGTCAGGCAGCGTCAGCCATGCGGGTCTAATCTGTCCaagtgtgaagaaaaaaaaaaagcaagccaCTTTGGAGAccattgcttttgtttctctttattaCCGCCGTCATTCTCGCCAGCAGCCGGCAGCAGTAACTGAGCACCAGTCCACCGCTGCCGGTGAAGCAGAAATGGCATGAGGGCATTACAGGGCATAAGCATAGAGTACAAGGTAGGCGACACATTTCGTCTGTAACAATGTCttcggtttgtttgtttgtttgggcaAAGGTATATAAAGACAACATTATGCCAAGAACGGCAGGATCAGATGGGAAGAGTTAAGATTTCTCAGAGCAACAAAAGTCAAAAGCGTTGTTTTCACTGTAGTGTTGTTACTGCGTTGACACTGTTTTGCACAGTGTTGTTGTAGTGTTGTGTTGTCATGTTTACTGCAGTGACACTGTTTTGCACCGTGTTGCTGTAGTGTTGTAGTGGGgacagtgttgtgctgtgtttgcTGTAGTGTTGTAGTGGGgacagtgttgtgctgtgtttgcTGTAGTGTTGTAGTGGGgacagtgttgtgctgtgtttgcTGTAGTGTTGTGTTGTCACGTTACTGCAGTGACAGTGTTCGCTGTAGTCTCGTAGTGAGGACATTGTTGTTAGGTGTGTATCAGTTGTTTCGGCCCTGTCTCGGGTGTCTTGACATGTGTCCGGTGCGTCTTGGCTGCGTCTTGGCTGCGTCAGCCCTGGGTCTCGGGCTGCTGGGTGGCCGCGGAGCGCTGCTCGCTCAGGGTATTGGCGATGTAGCCGATCAGCGTCATGAACTCGGGGAAACTCACTTTCCCGTCCTTATTGTCGTCCAGACCCTCCTTCATCTCATTCACGGCCTTTTTACTGTCTgtgtcctgagagagagagagagagagtgtaaggcaaagtagtgcagtgcagtgtagtatggtgcagtgtagtgcagtgtccccctgtcctctctctgcGGGTCTCCTGTACCGTTAGGATGTTGCCCAGCTGGCTATGCACCATTTTCTGGAAGTCTTTGCCCCCCATCGAGTCACGGCCCTTGGAGGCGCTCTGGAACACTTTCACTATGGTCATAATGGCAGACTCCATCTCTTGCTGCGGGACGGACAGGCGGACGGACTGGACAGAGGGACGGCTGGCAAGCTGtaggacagagagacaggaaaaaaGAGTGGGCGGAGAGAagcttaatattattattattatgatgtccAGTATTATAACTTAATTGTATGGTGGGGGGGGTTACAGGGTACAGTCAGAAACTCACTCACTGCCTCAATCGCTCACTACCTAACTCACTTTCTCACTGCCttactcactctcactcactacctaactcactcactctctcactgcctcactctctctcactcactgcCTTACTCTCACAGACTCACTCTCTCACTATCGCACTCTGACTCACTCACTACCTCACTCTCCCACCCTTTCACTGCCTTACTCTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171407 lncRNA downstream 2938 17126206 ~ 17129299 (-) True G136392
TU171394 lncRNA downstream 27780 17102403 ~ 17104457 (-) True G136383
TU171392 lncRNA downstream 29182 17102403 ~ 17103055 (-) False G136383
TU171385 lncRNA downstream 33512 17064556 ~ 17098725 (-) True AMCG00012372
TU171391 lncRNA downstream 38880 17092543 ~ 17093357 (-) True G136382
TU171402 lncRNA upstream 11515 17145422 ~ 17148086 (-) True G136391
TU171428 lncRNA upstream 58834 17192741 ~ 17193982 (-) True G136409
TU171431 lncRNA upstream 63328 17197235 ~ 17198702 (-) True G136411
TU171437 lncRNA upstream 74871 17208778 ~ 17211050 (-) False AMCG00012385
TU171427 lncRNA upstream 100021 17233928 ~ 17242006 (-) False G136408
AMCG00012373 mRNA downstream 50030 17080907 ~ 17082207 (-) True AMCG00012373
AMCG00012372 mRNA downstream 53030 17065337 ~ 17079207 (-) False AMCG00012372
AMCG00012371 mRNA downstream 142128 16985862 ~ 16990109 (-) True AMCG00012371
AMCG00012364 mRNA downstream 166366 16960383 ~ 16965871 (-) True AMCG00012364
AMCG00012361 mRNA downstream 180406 16945305 ~ 16951831 (-) True AMCG00012361
AMCG00012385 mRNA upstream 74908 17208815 ~ 17217639 (-) True AMCG00012385
AMCG00012384 mRNA upstream 112183 17246090 ~ 17254514 (-) True AMCG00012384
AMCG00012383 mRNA upstream 130856 17264763 ~ 17267311 (-) True AMCG00012383
AMCG00012390 mRNA upstream 210447 17344354 ~ 17364449 (-) True AMCG00012390
AMCG00012391 mRNA upstream 246749 17380656 ~ 17380934 (-) False AMCG00012391
TU171188 other downstream 432446 16699475 ~ 16699791 (-) True G136223
TU171187 other downstream 433127 16698642 ~ 16699110 (-) True G136222
TU171094 other downstream 699424 16431352 ~ 16432813 (-) False AMCG00012340
TU171089 other downstream 708337 16418192 ~ 16423900 (-) False AMCG00012340
TU171073 other downstream 817844 16312721 ~ 16314393 (-) True G136125
TU171432 other upstream 67867 17201774 ~ 17203233 (-) True G136412
TU171434 other upstream 74871 17208778 ~ 17211050 (-) False AMCG00012385
TU171433 other upstream 79937 17213844 ~ 17214963 (-) False AMCG00012385
TU171426 other upstream 100021 17233928 ~ 17242827 (-) True G136408
TU171572 other upstream 246273 17380180 ~ 17381595 (-) True AMCG00012391

Expression Profile