RNA id: TU171387


Basic Information

Item Value
RNA id TU171387
length 1793
RNA type TUCP
GC content 0.54
exon number 5
gene id G136378
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17093499 ~ 17133907 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCAATATTAATGCCCGTCTCCCTCTCTGGGTGTAttagcccctctctctccactctcaTACCCCAGGGCCGGGCCGCTGCAGGGTTGACCAGCTCCTGCAGGTGTGACACAGGCACCTGTCAGGCAGCGTCAGCCATGCGGGTCTAATCTGTCCaagtgtgaagaaaaaaaaaaagcaagccaCTTTGGAGAccattgcttttgtttctctttattaCCGCCGTCATTCTCGCCAGCAGCCGGCAGCAGTAACTGAGCACCAGTCCACCGCTGCCGGTGAAGCAGAAATGGCATGAGGGCATTACAGGGCATAAGCATAGAGTACAAGGTAGGCGACACATTTCGTCTGTAACAATGTCttcggtttgtttgtttgtttgggcaAAGGTATATAAAGACAACATTATGCCAAGAACGGCAGGATCAGATGGGAAGAGTTAAGATTTCTCAGAGCAACAAAAGTCAAAAGCGTTGTTTTCACTGTAGTGTTGTTACTGCGTTGACACTGTTTTGCACAGTGTTGTTGTAGTGTTGTGTTGTCATGTTTACTGCAGTGACACTGTTTTGCACCGTGTTGCTGTAGTGTTGTAGTGGGgacagtgttgtgctgtgtttgcTGTAGTGTTGTAGTGGGgacagtgttgtgctgtgtttgcTGTAGTGTTGTAGTGGGgacagtgttgtgctgtgtttgcTGTAGTGTTgtgcgagagagagagagagagagggggggggtaataagagctgggctgggctgCCAGTACTGCAAGTATacacctccctccctcgctccctccctcttcaGCCGGAGGTGTGCCAACGATATTGACTATCTCTCACTAGAGAccgtgagacagacagacagacagtagtAACAGAGAGAGGAACCACAGAGGCAGGCATGCAGGGAGGCGAGCGGTAGTGGAGTGACACAAGGATCGTGGGTTCGTTTTtcgttgtttttctttcttacagaCAAACGACTAgagactgacagagacagagacagagacagagagactgtgAGACTGACAGAGGGAGTTTGTGACACCAGTACAGAGGAGGAAGTTGGGGGACGGGACAGGAAGACAGGACGCCAGGTAGACGTAGAGTCAggtgcacagacacacactggaggacagacagagacacacacactgacagagactCACGCATACACACCATGAAGGTTACTGGGATCATGCTGGCCTCGTCCTGCCTGTCCGCCGCCATAATGCTGGGGTCGCTGTACCTGCGGGAACAGCGGGCCAAGGAGCTGCGCATCAAGGTGGAGTTCCTGGAGACAAAGCTGCGCATGACGGAGGAGGTGGCCGGCCAGTTCCGGGATGAGCTGACGCTGTACATCGCCGCGGAGGGCAAAGCCCACCAGGAACAGGCCGATCTGCAGGGGGTGCTGGACATGGCCGAGCAGCAGCTGCAGAGCCACAGGGAAAGCTCACAGGCCTGCGAGACCGAGAagAACCAGCTGGATGAGAACTTCAAAGCTGCAcagacagagctgcagaataGCAAAGGTCAGATGGACCAGGAGAGGGATCGTTGGACTGTAGACATCAATAACCTGAAACAGCAGGTGGCGCTCAAGAGCAAAGTGTGTGACTTTGTGGACCAGAATTCACCAGAGGGCAGGAAGATGTGCGGCCTGCCCCCCATAGCAGAGCCCCCCAAGGTAGAACCCCCGAAGGCAGAGCCCCCGAAGGAAGAGCCCAAGAAGGAGGAGCCCAAGAAGGAAGAGCCCCCCAAGGCAGAGCCCCCAAAGGAAGAGCCCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171391 lncRNA downstream 142 17092543 ~ 17093357 (-) True G136382
TU171383 lncRNA downstream 36498 17056612 ~ 17057001 (-) True G136376
TU171379 lncRNA downstream 53533 17039337 ~ 17039966 (-) True G136372
TU171292 lncRNA downstream 137140 16956142 ~ 16956359 (-) True G136307
TU171274 lncRNA downstream 178814 16912235 ~ 16914685 (-) True AMCG00012365
TU171402 lncRNA upstream 11515 17145422 ~ 17148086 (-) True G136391
TU171428 lncRNA upstream 58834 17192741 ~ 17193982 (-) True G136409
TU171431 lncRNA upstream 63328 17197235 ~ 17198702 (-) True G136411
TU171437 lncRNA upstream 74871 17208778 ~ 17211050 (-) False AMCG00012385
TU171427 lncRNA upstream 100021 17233928 ~ 17242006 (-) False G136408
AMCG00012373 mRNA downstream 11292 17080907 ~ 17082207 (-) True AMCG00012373
AMCG00012372 mRNA downstream 14292 17065337 ~ 17079207 (-) False AMCG00012372
AMCG00012371 mRNA downstream 103390 16985862 ~ 16990109 (-) True AMCG00012371
AMCG00012364 mRNA downstream 127628 16960383 ~ 16965871 (-) True AMCG00012364
AMCG00012361 mRNA downstream 141668 16945305 ~ 16951831 (-) True AMCG00012361
AMCG00012385 mRNA upstream 74908 17208815 ~ 17217639 (-) True AMCG00012385
AMCG00012384 mRNA upstream 112183 17246090 ~ 17254514 (-) True AMCG00012384
AMCG00012383 mRNA upstream 130856 17264763 ~ 17267311 (-) True AMCG00012383
AMCG00012390 mRNA upstream 210447 17344354 ~ 17364449 (-) True AMCG00012390
AMCG00012391 mRNA upstream 246749 17380656 ~ 17380934 (-) False AMCG00012391
TU171188 other downstream 393708 16699475 ~ 16699791 (-) True G136223
TU171187 other downstream 394389 16698642 ~ 16699110 (-) True G136222
TU171094 other downstream 660686 16431352 ~ 16432813 (-) False AMCG00012340
TU171089 other downstream 669599 16418192 ~ 16423900 (-) False AMCG00012340
TU171073 other downstream 779106 16312721 ~ 16314393 (-) True G136125
TU171432 other upstream 67867 17201774 ~ 17203233 (-) True G136412
TU171434 other upstream 74871 17208778 ~ 17211050 (-) False AMCG00012385
TU171433 other upstream 79937 17213844 ~ 17214963 (-) False AMCG00012385
TU171426 other upstream 100021 17233928 ~ 17242827 (-) True G136408
TU171572 other upstream 246273 17380180 ~ 17381595 (-) True AMCG00012391

Expression Profile