RNA id: TU171391


Basic Information

Item Value
RNA id TU171391
length 296
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G136382
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17092543 ~ 17093357 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NCCCCCCCCCACCGGCCCCCCGAAGAAGACACACGGACAAGCACAGGGATGTTCacattcagacagacagacaggcacacagacacacagaaagacacacagacacacacagtcacacacagatacacagacagacaggaacatagaaacacaaacacagacatgttATAAAACTGATATGTCTtatgaatcaataaaatattatataaaataacttttgGGTTGCCTTCTATGTGTGAGCCTTTAGTCACGTGATTACACACCTGTGGTGTGCTGtacctccttccctccctctt

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171383 lncRNA downstream 35542 17056612 ~ 17057001 (-) True G136376
TU171379 lncRNA downstream 52577 17039337 ~ 17039966 (-) True G136372
TU171292 lncRNA downstream 136184 16956142 ~ 16956359 (-) True G136307
TU171274 lncRNA downstream 177858 16912235 ~ 16914685 (-) True AMCG00012365
TU171191 lncRNA downstream 380910 16709574 ~ 16711633 (-) True G136226
TU171392 lncRNA upstream 9046 17102403 ~ 17103055 (-) False G136383
TU171394 lncRNA upstream 9046 17102403 ~ 17104457 (-) True G136383
TU171407 lncRNA upstream 32849 17126206 ~ 17129299 (-) True G136392
TU171386 lncRNA upstream 38880 17132237 ~ 17133907 (-) False G136378
TU171402 lncRNA upstream 52065 17145422 ~ 17148086 (-) True G136391
AMCG00012373 mRNA downstream 10336 17080907 ~ 17082207 (-) True AMCG00012373
AMCG00012372 mRNA downstream 13336 17065337 ~ 17079207 (-) False AMCG00012372
AMCG00012371 mRNA downstream 102434 16985862 ~ 16990109 (-) True AMCG00012371
AMCG00012364 mRNA downstream 126672 16960383 ~ 16965871 (-) True AMCG00012364
AMCG00012361 mRNA downstream 140712 16945305 ~ 16951831 (-) True AMCG00012361
AMCG00012385 mRNA upstream 115458 17208815 ~ 17217639 (-) True AMCG00012385
AMCG00012384 mRNA upstream 152733 17246090 ~ 17254514 (-) True AMCG00012384
AMCG00012383 mRNA upstream 171406 17264763 ~ 17267311 (-) True AMCG00012383
AMCG00012390 mRNA upstream 250997 17344354 ~ 17364449 (-) True AMCG00012390
AMCG00012391 mRNA upstream 287299 17380656 ~ 17380934 (-) False AMCG00012391
TU171188 other downstream 392752 16699475 ~ 16699791 (-) True G136223
TU171187 other downstream 393433 16698642 ~ 16699110 (-) True G136222
TU171094 other downstream 659730 16431352 ~ 16432813 (-) False AMCG00012340
TU171089 other downstream 668643 16418192 ~ 16423900 (-) False AMCG00012340
TU171073 other downstream 778150 16312721 ~ 16314393 (-) True G136125
TU171387 other upstream 142 17093499 ~ 17133907 (-) True G136378
TU171432 other upstream 108417 17201774 ~ 17203233 (-) True G136412
TU171434 other upstream 115421 17208778 ~ 17211050 (-) False AMCG00012385
TU171433 other upstream 120487 17213844 ~ 17214963 (-) False AMCG00012385
TU171426 other upstream 140571 17233928 ~ 17242827 (-) True G136408

Expression Profile