RNA id: TU171392


Basic Information

Item Value
RNA id TU171392
length 582
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G136383
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17102403 ~ 17104457 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTACTGTTCCTGACTGTACTGTTCCTGACTCTACTgttactactgtactgtacttgactctactgttactactgtactgtacctgactgtactgtacctgACTCTACTGTTACTACTGTACTGTTCCTGACTCTACTGTTACTACTGTACTATTCCTGACTCTATTgttactactgtactgtacctgaCTGTACTGTTCCTGACTCTACTGTTACTACTGTACTGTTGCTGACTGTACTGTTCCTGACTGTACTGTTCCTGACTCTCTACTGTTACTACTGTACTGTTGCTGATTCTACTCTACTGTTACAACTGTACTGTTCCTGACTCTACTGTTACTACTGTAcctgactgtactgtacctgactctactgtactgttactactgtactgtacctgaCTCTACTGTTACTACTGTATTATACCGGACTACTGTACTGTTCCTGACTGTACTCTACTGTTACTACTGTACTGTTCCTGACTCTGCTGttactactgtactgttactaaTACCAATAGCTACTGTTGAACTCTCCAGTGTACAGAAGCTCAGAATCGTCTGAAATAAGAATACACATTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171385 lncRNA downstream 3678 17064556 ~ 17098725 (-) True AMCG00012372
TU171391 lncRNA downstream 9046 17092543 ~ 17093357 (-) True G136382
TU171383 lncRNA downstream 45402 17056612 ~ 17057001 (-) True G136376
TU171379 lncRNA downstream 62437 17039337 ~ 17039966 (-) True G136372
TU171292 lncRNA downstream 146044 16956142 ~ 16956359 (-) True G136307
TU171407 lncRNA upstream 23151 17126206 ~ 17129299 (-) True G136392
TU171386 lncRNA upstream 29182 17132237 ~ 17133907 (-) False G136378
TU171402 lncRNA upstream 42367 17145422 ~ 17148086 (-) True G136391
TU171428 lncRNA upstream 89686 17192741 ~ 17193982 (-) True G136409
TU171431 lncRNA upstream 94180 17197235 ~ 17198702 (-) True G136411
AMCG00012373 mRNA downstream 20196 17080907 ~ 17082207 (-) True AMCG00012373
AMCG00012372 mRNA downstream 23196 17065337 ~ 17079207 (-) False AMCG00012372
AMCG00012371 mRNA downstream 112294 16985862 ~ 16990109 (-) True AMCG00012371
AMCG00012364 mRNA downstream 136532 16960383 ~ 16965871 (-) True AMCG00012364
AMCG00012361 mRNA downstream 150572 16945305 ~ 16951831 (-) True AMCG00012361
AMCG00012385 mRNA upstream 105760 17208815 ~ 17217639 (-) True AMCG00012385
AMCG00012384 mRNA upstream 143035 17246090 ~ 17254514 (-) True AMCG00012384
AMCG00012383 mRNA upstream 161708 17264763 ~ 17267311 (-) True AMCG00012383
AMCG00012390 mRNA upstream 241299 17344354 ~ 17364449 (-) True AMCG00012390
AMCG00012391 mRNA upstream 277601 17380656 ~ 17380934 (-) False AMCG00012391
TU171188 other downstream 402612 16699475 ~ 16699791 (-) True G136223
TU171187 other downstream 403293 16698642 ~ 16699110 (-) True G136222
TU171094 other downstream 669590 16431352 ~ 16432813 (-) False AMCG00012340
TU171089 other downstream 678503 16418192 ~ 16423900 (-) False AMCG00012340
TU171073 other downstream 788010 16312721 ~ 16314393 (-) True G136125
TU171432 other upstream 98719 17201774 ~ 17203233 (-) True G136412
TU171434 other upstream 105723 17208778 ~ 17211050 (-) False AMCG00012385
TU171433 other upstream 110789 17213844 ~ 17214963 (-) False AMCG00012385
TU171426 other upstream 130873 17233928 ~ 17242827 (-) True G136408
TU171572 other upstream 277125 17380180 ~ 17381595 (-) True AMCG00012391

Expression Profile