RNA id: TU171402


Basic Information

Item Value
RNA id TU171402
length 836
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G136391
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17145422 ~ 17148086 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaaattgaacaggtgttcctaataatcctttaggtgagtgtatatatataataaaaacacatcaaattGTATCTTatctaattatgtatttttttatttaaaaacaaagaaagttaCAATGAAGCAAAGAAAGCCCAAAGCAATCGATCACCGTGGGAGAGATGGAGCGGGTGTGAGGTGCGTTGCTGCTCTGATCCCCTGCCTTTAATTCACACTTCTGTTCATGTGGCTTTTAAAGTGGGGGGGCATTAAGGGGGCTTATGCTGTTGTGGTGGTGGAGTTGGGGGAGGTGGTCTGCATCTGTCTGGGggcttttctctccctccctatctctctccctccccctctctctttccctctcactctctcccacccctctatctctctgtctctcagtgtttctgtttctgtttgtactCCCTGAAGAAGTCGTTGCAGGCTACAGTGAGAGCCCCCACCAGGATGATGAACTCGGTGAAGTCCACCTCTCCGTCCTTGTTGCTGTCTAGGTCATTCATCACCCTGTCCACTGTGGCCTTGTCCTTTGGGCCCCCAGGTAGCTGCCCAGTTCGTTGGTCAGCAGGTCCTTCAGCTCGCCCTTGCTTAGCGTGAATTTGTTCCCCTCGCGGCCAGAGTAACTGTGGAAGGTCTCGATCATCAGGGCCATGGCACTCTCCAGTTTGGACATGTTGGCAgacaggaggaagaggacgagAGAACGAAAACcTGTGCAGCGAAGGCGTAGAGCTCTTGTCGTCcgaagagatggagagatgacGGAGAACAGAAAGCTGTCTGGCGTTTAAATagctcccctccccctccccttccctccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171386 lncRNA downstream 11515 17132237 ~ 17133907 (-) False G136378
TU171407 lncRNA downstream 16123 17126206 ~ 17129299 (-) True G136392
TU171394 lncRNA downstream 40965 17102403 ~ 17104457 (-) True G136383
TU171392 lncRNA downstream 42367 17102403 ~ 17103055 (-) False G136383
TU171385 lncRNA downstream 46697 17064556 ~ 17098725 (-) True AMCG00012372
TU171428 lncRNA upstream 44655 17192741 ~ 17193982 (-) True G136409
TU171431 lncRNA upstream 49149 17197235 ~ 17198702 (-) True G136411
TU171437 lncRNA upstream 60692 17208778 ~ 17211050 (-) False AMCG00012385
TU171427 lncRNA upstream 85842 17233928 ~ 17242006 (-) False G136408
TU171449 lncRNA upstream 111902 17259988 ~ 17261894 (-) True G136423
AMCG00012373 mRNA downstream 63215 17080907 ~ 17082207 (-) True AMCG00012373
AMCG00012372 mRNA downstream 66215 17065337 ~ 17079207 (-) False AMCG00012372
AMCG00012371 mRNA downstream 155313 16985862 ~ 16990109 (-) True AMCG00012371
AMCG00012364 mRNA downstream 179551 16960383 ~ 16965871 (-) True AMCG00012364
AMCG00012361 mRNA downstream 193591 16945305 ~ 16951831 (-) True AMCG00012361
AMCG00012385 mRNA upstream 60729 17208815 ~ 17217639 (-) True AMCG00012385
AMCG00012384 mRNA upstream 98004 17246090 ~ 17254514 (-) True AMCG00012384
AMCG00012383 mRNA upstream 116677 17264763 ~ 17267311 (-) True AMCG00012383
AMCG00012390 mRNA upstream 196268 17344354 ~ 17364449 (-) True AMCG00012390
AMCG00012391 mRNA upstream 232570 17380656 ~ 17380934 (-) False AMCG00012391
TU171387 other downstream 11515 17093499 ~ 17133907 (-) True G136378
TU171188 other downstream 445631 16699475 ~ 16699791 (-) True G136223
TU171187 other downstream 446312 16698642 ~ 16699110 (-) True G136222
TU171094 other downstream 712609 16431352 ~ 16432813 (-) False AMCG00012340
TU171089 other downstream 721522 16418192 ~ 16423900 (-) False AMCG00012340
TU171432 other upstream 53688 17201774 ~ 17203233 (-) True G136412
TU171434 other upstream 60692 17208778 ~ 17211050 (-) False AMCG00012385
TU171433 other upstream 65758 17213844 ~ 17214963 (-) False AMCG00012385
TU171426 other upstream 85842 17233928 ~ 17242827 (-) True G136408
TU171572 other upstream 232094 17380180 ~ 17381595 (-) True AMCG00012391

Expression Profile