RNA id: TU171427


Basic Information

Item Value
RNA id TU171427
length 364
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G136408
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17233928 ~ 17242827 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAGGCGTCATCCCTCACCAAGAAGCCTGTCAGCTCCTTCTCCAGCAGCTCTTTGACCTCAGGTTTGCTGAGGGAGTTGGGGTCACCATCTTTGCTGGCGTACTTGGTGAAGACACCCAGCATGGTTGTGATTGCATTCATCAAATCAGACATATTGGTGGAGAGAAGAATctacctgcagagagagagagagagagagagagagagagagagagagagagagagaaagagagagagagaagtcaaTCCATACATGCATCAAAATTAGACTGCAGGGCATGACGTCATAAGAGCAGGACAGTctacctgcagagagagaggggggtgagTTAGGTggagcttttattttattaaacaactCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171437 lncRNA downstream 22878 17208778 ~ 17211050 (-) False AMCG00012385
TU171431 lncRNA downstream 35226 17197235 ~ 17198702 (-) True G136411
TU171428 lncRNA downstream 39946 17192741 ~ 17193982 (-) True G136409
TU171402 lncRNA downstream 85842 17145422 ~ 17148086 (-) True G136391
TU171386 lncRNA downstream 100021 17132237 ~ 17133907 (-) False G136378
TU171449 lncRNA upstream 17982 17259988 ~ 17261894 (-) True G136423
TU171461 lncRNA upstream 47093 17289099 ~ 17290083 (-) True G136435
TU171463 lncRNA upstream 48134 17290140 ~ 17290396 (-) True G136437
TU171477 lncRNA upstream 60920 17302926 ~ 17310050 (-) True G136450
TU171500 lncRNA upstream 72902 17314908 ~ 17318479 (-) True G136470
AMCG00012385 mRNA downstream 16289 17208815 ~ 17217639 (-) True AMCG00012385
AMCG00012373 mRNA downstream 151721 17080907 ~ 17082207 (-) True AMCG00012373
AMCG00012372 mRNA downstream 154721 17065337 ~ 17079207 (-) False AMCG00012372
AMCG00012371 mRNA downstream 243819 16985862 ~ 16990109 (-) True AMCG00012371
AMCG00012364 mRNA downstream 268057 16960383 ~ 16965871 (-) True AMCG00012364
AMCG00012384 mRNA upstream 4084 17246090 ~ 17254514 (-) True AMCG00012384
AMCG00012383 mRNA upstream 22757 17264763 ~ 17267311 (-) True AMCG00012383
AMCG00012390 mRNA upstream 102348 17344354 ~ 17364449 (-) True AMCG00012390
AMCG00012391 mRNA upstream 138650 17380656 ~ 17380934 (-) False AMCG00012391
AMCG00012393 mRNA upstream 175493 17417499 ~ 17423232 (-) False AMCG00012393
TU171433 other downstream 18965 17213844 ~ 17214963 (-) False AMCG00012385
TU171434 other downstream 22878 17208778 ~ 17211050 (-) False AMCG00012385
TU171432 other downstream 30695 17201774 ~ 17203233 (-) True G136412
TU171387 other downstream 100021 17093499 ~ 17133907 (-) True G136378
TU171188 other downstream 534137 16699475 ~ 16699791 (-) True G136223
TU171572 other upstream 138174 17380180 ~ 17381595 (-) True AMCG00012391
TU171593 other upstream 174568 17416574 ~ 17434113 (-) True AMCG00012393
TU171623 other upstream 261612 17503618 ~ 17503986 (-) True G136544
TU171745 other upstream 444326 17686332 ~ 17688512 (-) True G136625
TU171807 other upstream 478720 17720726 ~ 17724068 (-) True G136666

Expression Profile