RNA id: TU171432


Basic Information

Item Value
RNA id TU171432
length 931
RNA type TUCP
GC content 0.47
exon number 3
gene id G136412
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17201774 ~ 17203233 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccTCTACACTGCAGGCTGATTTTGCTCTGAACATCTACCAAATAGCTGTTAGTATTATGCTTTGGATTTTACCTTTAAATGTCAGAGTAATTCTGCTATGACCTGATTGCAATCGAGCAAAATACTTGTACACTTGTAATTCAGACTCACACAAGACCAcaccagagaagaaaaacatgctGCCATTAATACTTTCATTATGATGCAACCATGGTAGTTATTTGCGGttaatgacaaacaaacacacacactaacacactaaTACAGGTGCTTGCAGAGGCCATATAGCAATCGCAGGAATGAGAGAGATTGGATGGAGAGCAGGGCAGGAGGTATTGCGTGGCACTTTGGCATCAGCCTCAGATAGTGTCTCCACAACAACAGatccatcctcctctccctAGTGCCCATCTTTATATATAACGCAGGGCAGAGCGAGTCTCACTCACACAGCAAGCTTTTCTCATTCCTACCTGAGCAGgCTCCACTATCCTACACTGACCATGTCTCTGGCTGAAGCTGCACGCATCGTGTCCGAGGTGTTCAATAAGTACGCCGCTGAGGACCAGCACAAGGACACACTGAGCCCAATCGAGCTCAAGAAACTGCTGCAGGCTGAGTGCAGCACGAAGggATCAATCTGCACTTCAAAGTTGGACGAGGTGATGAAACGCCTGGATAACAACATGGACGGACAGATCGACATCGTGGAGTTTGGCACTCTGATCGGCATGATGGCCAAGcgaatgtgagagagagagagagacactcctcccacccccaaccccccctccccatcttcTGCTTGAACAACAGAGATGCTGGAGAGAGTGAGGGATGGAGGGAAGGAgcgggagagaggagggaggagtttaTCTTTCCTCTGTAGaataactaaaatgaaaataaatatacattgacATTAAAATCA

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171431 lncRNA downstream 3072 17197235 ~ 17198702 (-) True G136411
TU171428 lncRNA downstream 7792 17192741 ~ 17193982 (-) True G136409
TU171402 lncRNA downstream 53688 17145422 ~ 17148086 (-) True G136391
TU171386 lncRNA downstream 67867 17132237 ~ 17133907 (-) False G136378
TU171407 lncRNA downstream 72475 17126206 ~ 17129299 (-) True G136392
TU171437 lncRNA upstream 5545 17208778 ~ 17211050 (-) False AMCG00012385
TU171427 lncRNA upstream 30695 17233928 ~ 17242006 (-) False G136408
TU171449 lncRNA upstream 56755 17259988 ~ 17261894 (-) True G136423
TU171461 lncRNA upstream 85866 17289099 ~ 17290083 (-) True G136435
TU171463 lncRNA upstream 86907 17290140 ~ 17290396 (-) True G136437
AMCG00012373 mRNA downstream 119567 17080907 ~ 17082207 (-) True AMCG00012373
AMCG00012372 mRNA downstream 122567 17065337 ~ 17079207 (-) False AMCG00012372
AMCG00012371 mRNA downstream 211665 16985862 ~ 16990109 (-) True AMCG00012371
AMCG00012364 mRNA downstream 235903 16960383 ~ 16965871 (-) True AMCG00012364
AMCG00012361 mRNA downstream 249943 16945305 ~ 16951831 (-) True AMCG00012361
AMCG00012385 mRNA upstream 5582 17208815 ~ 17217639 (-) True AMCG00012385
AMCG00012384 mRNA upstream 42857 17246090 ~ 17254514 (-) True AMCG00012384
AMCG00012383 mRNA upstream 61530 17264763 ~ 17267311 (-) True AMCG00012383
AMCG00012390 mRNA upstream 141121 17344354 ~ 17364449 (-) True AMCG00012390
AMCG00012391 mRNA upstream 177423 17380656 ~ 17380934 (-) False AMCG00012391
TU171387 other downstream 67867 17093499 ~ 17133907 (-) True G136378
TU171188 other downstream 501983 16699475 ~ 16699791 (-) True G136223
TU171187 other downstream 502664 16698642 ~ 16699110 (-) True G136222
TU171094 other downstream 768961 16431352 ~ 16432813 (-) False AMCG00012340
TU171089 other downstream 777874 16418192 ~ 16423900 (-) False AMCG00012340
TU171434 other upstream 5545 17208778 ~ 17211050 (-) False AMCG00012385
TU171433 other upstream 10611 17213844 ~ 17214963 (-) False AMCG00012385
TU171426 other upstream 30695 17233928 ~ 17242827 (-) True G136408
TU171572 other upstream 176947 17380180 ~ 17381595 (-) True AMCG00012391
TU171593 other upstream 213341 17416574 ~ 17434113 (-) True AMCG00012393

Expression Profile