RNA id: TU171471


Basic Information

Item Value
RNA id TU171471
length 1411
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G136444
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17300527 ~ 17304999 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TcaggaacatttttattttagaaaaagaaGAGATTAATGCCATAGATGTGAAATCTACAAAACATAGTAACAATTcagatgaaaatacaaatatgactcAACTATAAACACTGAGTTATTAGCCATATTTTAACAGcagttttaaaaactgaaactaacagttaataattaaaatctcagTCAACTAAGTCATCCAgggtaataacaataatagtcaTTAATAGTGACCAACATATgaccaaaacaacaactttcACTTTTCAAGGGATACCTTTGTTGCAGTCGCAGGTGTGTCGAAGTCAGCAGCTGTCTTCTGATgatcaaatgcaaatgcaaattagCATGGACTACTGCAGGAGTGACTACTTTCTGGTTTGTTTCGGACTACCTTTTTTAAATCtagattaaaacacaaatctggGGTGTAGAATGGATATGTTGTCGTCCATAAATTACACCCCCACCCCGTCATAACTCAGAATAGTAGGTTTCTGGTGACCATCAAGAAAACAGTGGGCACTGGCTGACTGCTACAATACAAAGATACTGATACATACAGCTTTTAACATCACggtttgtgtaattttaatgtACAAATTCAATCCAGTACAGATATATCAAGTATGAATACACTGCTGAGATTTAACGTTGCATGCTTAACTGAAACTCTTCCCACTCTGTGAGCAGCTGTACGATTTCTCTCGTGTGTGAACGCGCTGGTGAGAATTAAGTTGTCCTGCCTTggtgaagctcttcccacactgggagcagctgtACGGTTTGTGCCCAGTGTGGATGAGCTGGTGTGATTTAAGGCTTCCTGCGTgagtgaaactcttcccacactgggggCAGCTATATGGTTTCTCTCCAGTGTGACTGcgctggtgagatttaaggTTCCCAGTCTGGGTGAAGCACATCCCACACAGGGGGCAactgtatggtttctctcctgtgtgaatgcgctggtgtctTTTAAGGCTTTCTGCATGAGTGAAACTCATCCCACACAGGGGGCAACTGTACGGTTTCTCCCCCGTGTGAATGCGctgatgtattttaaagctttttgcatGACAGAAGCTCTTTCCACACAGAGAGCAACTGTATGGTTTCTCCCccgtgtgaatgcgctggtgacgTTTAAGGCTTACTGCCTGAGTGAAGCAATTCCCACACAAGGAACAgctgtacggtttctctcctgtgtgaatgcactGGTGTAATTTAAGGCTGTTTGCCTgagtgaaactcttcccacactgggagcagatGAACGGTTTCTCCCCTGTGTGAATACGCTGGTGTGTTTTAAGATCTGATGCACTggtgaagctcttcccacacaggGTGCAGCTGTGCACTCTTTTCCGTGTCAGAATGCATTGGTGTCTTTNNAAGCTTCCAg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171462 lncRNA upstream 9998 17290145 ~ 17290529 (+) True G136436
TU171337 lncRNA upstream 91168 17127155 ~ 17209359 (+) False G136341
TU171352 lncRNA upstream 128421 17164976 ~ 17172106 (+) True G136351
TU171278 lncRNA upstream 322314 16957458 ~ 16978213 (+) True G136295
TU171280 lncRNA upstream 343232 16956689 ~ 16957295 (+) True G136297
TU171485 lncRNA downstream 25795 17330794 ~ 17332570 (+) True G136457
TU171486 lncRNA downstream 34579 17339578 ~ 17340736 (+) True G136458
TU171518 lncRNA downstream 79937 17384936 ~ 17388799 (+) False AMCG00012387
TU171519 lncRNA downstream 80282 17385281 ~ 17388799 (+) False AMCG00012387
TU171517 lncRNA downstream 80317 17385316 ~ 17388799 (+) True AMCG00012387
AMCG00012389 mRNA upstream 10632 17269066 ~ 17289895 (+) True AMCG00012389
AMCG00012377 mRNA upstream 41928 17255412 ~ 17258599 (+) True AMCG00012377
AMCG00012379 mRNA upstream 57698 17238280 ~ 17242829 (+) True AMCG00012379
AMCG00012382 mRNA upstream 65593 17231345 ~ 17234934 (+) True AMCG00012382
AMCG00012378 mRNA upstream 78113 17221383 ~ 17222414 (+) True AMCG00012378
AMCG00012388 mRNA downstream 64264 17369263 ~ 17371553 (+) True AMCG00012388
AMCG00012386 mRNA downstream 69961 17374960 ~ 17380121 (+) True AMCG00012386
AMCG00012387 mRNA downstream 80561 17385560 ~ 17388672 (+) False AMCG00012387
AMCG00012395 mRNA downstream 192455 17497454 ~ 17504572 (+) True AMCG00012395
AMCG00012401 mRNA downstream 204373 17509372 ~ 17522821 (+) True AMCG00012401
TU171338 other upstream 36123 17231376 ~ 17264404 (+) False G136341
TU171333 other upstream 65578 17231376 ~ 17234949 (+) False G136341
TU171339 other upstream 85644 17129774 ~ 17214883 (+) False G136341
TU171331 other upstream 165697 17129980 ~ 17134830 (+) True G136341
TU171327 other upstream 171188 17126013 ~ 17129339 (+) True AMCG00012374
TU171552 other downstream 154485 17459484 ~ 17466059 (+) True G136499
TU171527 other downstream 169649 17474648 ~ 17476097 (+) False G136489
TU171630 other downstream 212451 17517450 ~ 17518398 (+) False AMCG00012401
TU171641 other downstream 242369 17547368 ~ 17547968 (+) True G136558
TU171661 other downstream 340642 17645641 ~ 17646905 (+) True G136566

Expression Profile