RNA id: TU171498


Basic Information

Item Value
RNA id TU171498
length 921
lncRNA type intronic
GC content 0.47
exon number 2
gene id G136469
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17350820 ~ 17351911 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agacacacaccacacaacactgcacaaccCGCACTACATAACACTGCACCAACACTGCTCAACACAAAtcacaacactgcacaacacacagcacacaaccaacactgcacaacaaactgcacaacacacagcacacaaccaacactgcacaacacacggcacacacaaaacacaacactgcacaacacacagtacacaaccaacactgcacaaaacacaacactgcacaacacacagtacacaaccaacactgcacaacacacggcacacacaaaacacaacactgcacaacacacagcacacaaccaacactgcacaacataccacacaacactgcacaacagacacacaacacacactgcacaacacaccacagcacacaacactgcAGTAACTGCCCGCCCTCTTCCTGCTGTCCTCAGAGCAACACTCCAGTGACCAGGCCTGTCTCGACCATGACGGGCTGCGCAACCTGCTGCGCACAGACATGAGCAACTACATCAAGGAAATGAATCTGGCACTGTTTGAGGAGCTGTGGAACTATGCTGACAAGGATGCAGATGGCTGTGTGACCCCTGAAGAATACAGCAGTCTAGTCACCTTCATCACTGGCTGaccacacactgaacactgtgtgtgtgtgagagagagagaggtgtggggGTGGAGGAAAGGTGTTCTACTGTATATGTAGTGTGTCTCTGAATCAGTgtatagctgtgtgtgtgtgtgtatgtctcagtatcagtgtgagtgtgggaggggggaggtTGCTTTCAGGGCACtatataaattgattaattgcttggggattatttaaataaacaattcagtACATAACTGGTGTAGTGGTAGTAACTTCTGTCATTCTTAAACTgaactttgtattgatttgtattactgcacttttgtattgcttgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171500 lncRNA downstream 32341 17314908 ~ 17318479 (-) True G136470
TU171477 lncRNA downstream 40770 17302926 ~ 17310050 (-) True G136450
TU171463 lncRNA downstream 60424 17290140 ~ 17290396 (-) True G136437
TU171461 lncRNA downstream 60737 17289099 ~ 17290083 (-) True G136435
TU171449 lncRNA downstream 88926 17259988 ~ 17261894 (-) True G136423
TU171574 lncRNA upstream 50068 17401979 ~ 17402366 (-) True G136517
TU171575 lncRNA upstream 50526 17402437 ~ 17402721 (-) True G136518
TU171591 lncRNA upstream 64016 17415927 ~ 17416475 (-) True G136521
TU171601 lncRNA upstream 95619 17447530 ~ 17448098 (-) True G136525
TU171614 lncRNA upstream 115978 17467889 ~ 17469776 (-) True G136536
AMCG00012383 mRNA downstream 83509 17264763 ~ 17267311 (-) True AMCG00012383
AMCG00012384 mRNA downstream 96306 17246090 ~ 17254514 (-) True AMCG00012384
AMCG00012385 mRNA downstream 133181 17208815 ~ 17217639 (-) True AMCG00012385
AMCG00012373 mRNA downstream 268613 17080907 ~ 17082207 (-) True AMCG00012373
AMCG00012372 mRNA downstream 271613 17065337 ~ 17079207 (-) False AMCG00012372
AMCG00012391 mRNA upstream 28745 17380656 ~ 17380934 (-) False AMCG00012391
AMCG00012393 mRNA upstream 65588 17417499 ~ 17423232 (-) False AMCG00012393
AMCG00012394 mRNA upstream 108012 17459923 ~ 17465336 (-) True AMCG00012394
AMCG00012392 mRNA upstream 123463 17475374 ~ 17483359 (-) True AMCG00012392
AMCG00012399 mRNA upstream 156013 17507924 ~ 17511092 (-) True AMCG00012399
TU171426 other downstream 107993 17233928 ~ 17242827 (-) True G136408
TU171433 other downstream 135857 17213844 ~ 17214963 (-) False AMCG00012385
TU171434 other downstream 139770 17208778 ~ 17211050 (-) False AMCG00012385
TU171432 other downstream 147587 17201774 ~ 17203233 (-) True G136412
TU171387 other downstream 216913 17093499 ~ 17133907 (-) True G136378
TU171572 other upstream 28269 17380180 ~ 17381595 (-) True AMCG00012391
TU171593 other upstream 64663 17416574 ~ 17434113 (-) True AMCG00012393
TU171623 other upstream 151707 17503618 ~ 17503986 (-) True G136544
TU171745 other upstream 334421 17686332 ~ 17688512 (-) True G136625
TU171807 other upstream 368815 17720726 ~ 17724068 (-) True G136666

Expression Profile