RNA id: TU171500


Basic Information

Item Value
RNA id TU171500
length 3152
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G136470
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17314908 ~ 17318479 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttattttagaaaaagaaGAGATTAATGCCATAGATGTGAAATCTACAAAACATAGTAACAATTcagatgaaaatacaaatatgactcAACTATAAACACTGAGTTATTAGCCATATTTTAACAGcagttttaaaaactgaaactaacagtttaaaaaaaaacaacaacacagtgaACTGGAAAATCTCAGACAATTAAGTCATCCCGGGTAAGGactctgttaataataatactgggGTACTTAATGTGTGGCACAGATTAGTGTCATTCACTGCTGGAGAATGAAGTCAGACACAGAACTGAGTGAATTTCCCAGACAGACACTGATGtctaatgcctcggttccactggcttaagcgtccgtgccgtgtTGTGCCGTGCCGGattcccagagctttttttgtaaatccAGGCAGCTGtgaatccgtccctctgatgggaggagcagcgactgtgggtttggtttgtgttttttttattttttaaaacaaaaacagagaacagtacgagcgatagagcctgacgtgaaaaatacttttgtgtgtgttttattctttgtgttttacatgattgtaaacagcgtaataaatacacgtttctgttcagagatattaggaagagctaaacgtgtagacaacattatattcagacacgcatgttcacataagaatacgtttccatgtgcaacaatatctacatatttgctatttagtattattatcatcatcatttgtgatagtatgtatgtattttaaatggcacaacgtgactcccttaacttattactctttctgcagatttgtaactgcaaacaatactttttgccgaattatttataatgtacttatcagatcCTTAACCCGGGCAAGtaacagctgaaacaaaatacacacgtttcatgattaatcatccagctacaatatagcaggtttaattgaactaaagtgtgcgcgtctcagtcatggcgtttatggactcatttattaaaccagtccttaatgttttagagggaaacccagatctgcttatttatttattcattaatttatcttgtaaatggacacacgttaactgaatcgtgttcgccttcctACTGAttgtctgcggattgtcctgcacaccattcacaaaacacagcctgaaacacgtccagttattaatattgtatgaataacATCGGCTCCTACCGatctgattattatccttcagtttattttaactagtcactgCATTGCACCGGTCCTGCGTTaatacactcagatattaactgtaagcagtcattgtttctgtacatggatttcactccatgttgctaataaaactaatttcttcgtgatcccacacggcatttgagattatatctATGTTTACAAGTCAAGCGCACAGCTCCACTGAAAGCGACTCATTTCCTGGGCGATTCTCTTTTCAAGGTTTACATTTCTTGCAGTCACAGGTGTGTCAAAGTCAGCAGCTGTCTTCTGATAGTTCTTCAATCAGAGTTAATGCAAATTATCATGGACTACTGTGGGAGTGACTActttctggtttgttttggactgctttgttttctagattaaaaaacaaatctggggTGTAGAATGGATATGTTGTCGTCCATAAATTACACCACCACCCTGTCATAACTCAGAACAGCATTTTTCTGGTGACCATAAAGAAAACAGTAGGCGCTGGCCGAGTGATACAATACAAAGATACCTTGAGAGACTAATACATACAGCCAGGAACGTCACAAATGGGAGTGAACAGGGGAAATGATTCACACACCCCGTGTGTAGAAAACACTAATGAGTAAACAACAACTCACATCCTCTACATAAATTGGTGCATATACCTCCACCCACCCCCATCCTCCCTATGGGAAATGGTTTGTCCCAAGTCGCATATGCAGTCCTGCACAACTGCATGTTCAGGCCAGAGAGAAAACGAAACTGTAGCACTGAAATGTGGAAATCTGTACGTCTGTGATTTTTTGCTATAACACAGGAGAAATCACCTTCTACTGCCtggctttttgtattttttattctgtcatAGTTGCAAAACATTGGACAATTTCCACCCTCCTCTGTGACaaacaaattttaaattttCAAATCTATTGCTCTCCAGATTCTCTCTAGTATGAATACACTGGAAGAAATTTAAGGTTGCTTTAAGGGAAGCTCTTCCCACTCTGGGAGCAGCTGTACAATTTCTCCTCCTGTGTGAGTAAGCTGGTGACGTTTAAGGTTTCCTCCATGAATGAAACTCTTCTGACACAGGGAACAGCTGTATGGTTtctcccctgtgtgtgtgagatggtGTGTTTTAAGGCTCTTTGCATGAcggaaactcttcccacactgggaacaGCTGTACGGTTTCTCCCCTGTGTGAATGAGTTGGTGTGATTTAAGGTTTGCTGCCTGcgtgaaactcttcccacacaggGAACAGCAGTAGGGTTTCtcccctgtgtgaatgcgctggtgacaATTAAGGTCTCTTGTGTtagtgaagctcttcccacactctGAGCAACTGTAGGGCTTCTCCCCTGTGTGACTGTGCTGATGTAATTTAAGGTTGTTTGTATGACTGAAGCTCTTTCCACACAGGGAGCAGCAGTACGGTTTCTcacctgtgtgaatgcgctggtgagaaTGAAGGCCTCCTACATTgttgaaactcttcccacataGGGAGCAGGTATATGGTTTCTCACCTGTATGAATACGCTGGTGAGCTTTCAGTTTTGACGCATAATcaaagctcttcccacactgggggcagctgtacggtttctcccctgtgtgaatgcgctggtgtgttTTAAGGTTTGCCGTCTgagtgaaactcttcccacactgggagcagctaTACGGTTTCAcacctgtgtgaatgcgctggtgagtTTTAAGGTTTGCGGCCTgagtgaaactcttcccacactgggagcagctgtacggtttctctcctgtgtgaatgcgctggtgagatATCAGACTTTTTGCCCcagtgaagctcttcccacacaggGTGCAGCTGTGCACTCTTTTCTGTGTCAGAATGCATTGGTGTCTTTTTAAGCTTCCAGAGTTCCTGTACGTTTTCTCACAGTGGGGGCAGCGATGGCAGCCCTGATGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171477 lncRNA downstream 4858 17302926 ~ 17310050 (-) True G136450
TU171463 lncRNA downstream 24512 17290140 ~ 17290396 (-) True G136437
TU171461 lncRNA downstream 24825 17289099 ~ 17290083 (-) True G136435
TU171449 lncRNA downstream 53014 17259988 ~ 17261894 (-) True G136423
TU171427 lncRNA downstream 72902 17233928 ~ 17242006 (-) False G136408
TU171498 lncRNA upstream 32341 17350820 ~ 17351911 (-) True G136469
TU171574 lncRNA upstream 83500 17401979 ~ 17402366 (-) True G136517
TU171575 lncRNA upstream 83958 17402437 ~ 17402721 (-) True G136518
TU171591 lncRNA upstream 97448 17415927 ~ 17416475 (-) True G136521
TU171601 lncRNA upstream 129051 17447530 ~ 17448098 (-) True G136525
AMCG00012383 mRNA downstream 47597 17264763 ~ 17267311 (-) True AMCG00012383
AMCG00012384 mRNA downstream 60394 17246090 ~ 17254514 (-) True AMCG00012384
AMCG00012385 mRNA downstream 97269 17208815 ~ 17217639 (-) True AMCG00012385
AMCG00012373 mRNA downstream 232701 17080907 ~ 17082207 (-) True AMCG00012373
AMCG00012372 mRNA downstream 235701 17065337 ~ 17079207 (-) False AMCG00012372
AMCG00012390 mRNA upstream 25875 17344354 ~ 17364449 (-) True AMCG00012390
AMCG00012391 mRNA upstream 62177 17380656 ~ 17380934 (-) False AMCG00012391
AMCG00012393 mRNA upstream 99020 17417499 ~ 17423232 (-) False AMCG00012393
AMCG00012394 mRNA upstream 141444 17459923 ~ 17465336 (-) True AMCG00012394
AMCG00012392 mRNA upstream 156895 17475374 ~ 17483359 (-) True AMCG00012392
TU171426 other downstream 72081 17233928 ~ 17242827 (-) True G136408
TU171433 other downstream 99945 17213844 ~ 17214963 (-) False AMCG00012385
TU171434 other downstream 103858 17208778 ~ 17211050 (-) False AMCG00012385
TU171432 other downstream 111675 17201774 ~ 17203233 (-) True G136412
TU171387 other downstream 181001 17093499 ~ 17133907 (-) True G136378
TU171572 other upstream 61701 17380180 ~ 17381595 (-) True AMCG00012391
TU171593 other upstream 98095 17416574 ~ 17434113 (-) True AMCG00012393
TU171623 other upstream 185139 17503618 ~ 17503986 (-) True G136544
TU171745 other upstream 367853 17686332 ~ 17688512 (-) True G136625
TU171807 other upstream 402247 17720726 ~ 17724068 (-) True G136666

Expression Profile