RNA id: TU171521


Basic Information

Item Value
RNA id TU171521
length 342
lncRNA type inter_gene
GC content 0.64
exon number 1
gene id G136486
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17402019 ~ 17402360 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTGAGCCGGTGCTGGAAGCGCGTCTGATCTCCCGTGTTTGTTTGCACTGCAGGACATTGAGAACTGGGACTCGCTTTTTGTGTCGTCGTCGTCGTTGTTTTGCTGCTATCTGTCCGTGTTGCGGTGGGTCTGCATCACAGCACCGCCTCCCTGCTCTACCCGCACGCCGCGATGGACGTGTTGTGGATGGTGTGCGTGGCCGTGGCTGCGGGGGTCGCCGCGGCGGAGAGGCACAGCGTGTACTGGAACAGCAGCAACCCCAAGTGAGTGCCTCGCCGGCCGCAGGGTGCGTGTGCTGTGCGTCTGCGGGCCGGTTGGGACCCGGTGCTGTGCGATCGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171518 lncRNA upstream 13220 17384936 ~ 17388799 (+) False AMCG00012387
TU171519 lncRNA upstream 13220 17385281 ~ 17388799 (+) False AMCG00012387
TU171517 lncRNA upstream 13220 17385316 ~ 17388799 (+) True AMCG00012387
TU171486 lncRNA upstream 61283 17339578 ~ 17340736 (+) True G136458
TU171485 lncRNA upstream 69449 17330794 ~ 17332570 (+) True G136457
TU171536 lncRNA downstream 9401 17411761 ~ 17476097 (+) False G136489
TU171542 lncRNA downstream 16855 17419215 ~ 17462685 (+) True G136490
TU171538 lncRNA downstream 31869 17434229 ~ 17476097 (+) False G136489
TU171524 lncRNA downstream 72288 17474648 ~ 17476097 (+) True G136489
TU171533 lncRNA downstream 72288 17474648 ~ 17476097 (+) False G136489
AMCG00012387 mRNA upstream 13347 17385560 ~ 17388672 (+) False AMCG00012387
AMCG00012386 mRNA upstream 21898 17374960 ~ 17380121 (+) True AMCG00012386
AMCG00012388 mRNA upstream 30466 17369263 ~ 17371553 (+) True AMCG00012388
AMCG00012389 mRNA upstream 112124 17269066 ~ 17289895 (+) True AMCG00012389
AMCG00012377 mRNA upstream 143420 17255412 ~ 17258599 (+) True AMCG00012377
AMCG00012395 mRNA downstream 95094 17497454 ~ 17504572 (+) True AMCG00012395
AMCG00012401 mRNA downstream 107012 17509372 ~ 17522821 (+) True AMCG00012401
AMCG00012396 mRNA downstream 127413 17529773 ~ 17537629 (+) True AMCG00012396
AMCG00012397 mRNA downstream 150226 17552586 ~ 17578771 (+) True AMCG00012397
AMCG00012406 mRNA downstream 179016 17581376 ~ 17598072 (+) True AMCG00012406
TU171338 other upstream 137615 17231376 ~ 17264404 (+) False G136341
TU171333 other upstream 167070 17231376 ~ 17234949 (+) False G136341
TU171339 other upstream 187136 17129774 ~ 17214883 (+) False G136341
TU171331 other upstream 267189 17129980 ~ 17134830 (+) True G136341
TU171327 other upstream 272680 17126013 ~ 17129339 (+) True AMCG00012374
TU171552 other downstream 57124 17459484 ~ 17466059 (+) True G136499
TU171527 other downstream 72288 17474648 ~ 17476097 (+) False G136489
TU171630 other downstream 115090 17517450 ~ 17518398 (+) False AMCG00012401
TU171641 other downstream 145008 17547368 ~ 17547968 (+) True G136558
TU171661 other downstream 243281 17645641 ~ 17646905 (+) True G136566

Expression Profile