RNA id: TU171533


Basic Information

Item Value
RNA id TU171533
length 1378
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G136489
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17411761 ~ 17476097 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgcgTTTCAGAAGCAaagaatttatttttccactacATTCTTTCCATTATTCATTCCTCTGCTTTCTGTTCTGTTGCTGTCTGAACAGGACGGTCTTTGGCCTGGTTTCACATTTCTCACAGAGTCACATTTCaatctgggcccctatactataccaTACCAAACTATACTATATAGTATACTATAGTCTACACATCTCTGgctccattaataataataataactataataataattaggctACATATTGTACTCAGTTCTGCCATTCCATTCAGCTCCTTTAAATACAGTCTGCTGGTCAACGCAATTCAATCCTCAATTCTGCAGCATGTGACGTGTCCAGCTGGGGGCGCCAGACCTCCACTGCGCTACATGCTTGGAGTCGGTGAAGTCAATTCACATGGTGTTGGAGTAACAATGGCTTTTCAAAAGAAAGataatttgttgttattattattattattgttattattgttattactgctAGATTTACTGGGATTTAAGTAATGgacccccccccacaaacacaaaataaaaaaaaaacaacgcaACATGACAATTACAACGATATACTGtgctaatacaatacataataataattaaaagggaACAAAGAAATATTATGTGGGATTTCTTTACCAGTGTTCCGTCTTCCCTTCTCTCCaaaatgtcagtgtgtcagtcagtcagtgtgtcagtcagtcagtcagtcagtgtgtcagtcagtcagtcagtcagtgtcagtcagtgtgtcagtcactcagtcagtcagtgtgtcagtcactcagtcagtcagtgtgtcagtcactcagtcagtgtgtcagtcactcagtcagtcagtcagtcagtgtgtcagtcagtcagttagtcagtcagtcagtgtgttagtcagtcagtgtgttagtcagtcagtcagtgtgtcagtcagacagtcagtcattcagtcagtcagtttgtcagtcattcagtcagtcagtttgtcagtcactcagtcagtcagtgtgtcagtcactcagtcagtcagtcagtcagtgtgtcagtcagtcagtcagtgtgtcagtcagtcagtcagtcagtcagtgtgtcagtcagtcagtcagtcagtcagtcagtcagtcattcagtcagtcagtttgtcagtcagtcagtcagtgtgtcagtcagacagtcagtgtgtgttgtgggtgGGGCATGTCAGTGTGGGCGGGGCACAGGGTTCATCAGGGTCATGTGCTCCGCCCCCTTGAAGGGCAGTTTCTCGCCGCTGTAGTAGCGCACGAGTTCGGGAACGCTGCCGAAGACGCAGCTGCTCTGGTCCAGGGTGAAGCCGCTGTCCCTCGTCTCGGCCACGATGATGTGCACGCAGCCCTGGCTGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171542 lncRNA upstream 11963 17419215 ~ 17462685 (+) True G136490
TU171521 lncRNA upstream 72288 17402019 ~ 17402360 (+) True G136486
TU171518 lncRNA upstream 85849 17384936 ~ 17388799 (+) False AMCG00012387
TU171617 lncRNA downstream 12253 17488350 ~ 17488827 (+) True G136538
TU171618 lncRNA downstream 13222 17489319 ~ 17489544 (+) True G136539
TU171659 lncRNA downstream 147016 17623113 ~ 17635961 (+) True G136564
TU171663 lncRNA downstream 172531 17648628 ~ 17649107 (+) True G136568
TU171665 lncRNA downstream 173168 17649265 ~ 17653462 (+) False G136569
AMCG00012387 mRNA upstream 85976 17385560 ~ 17388672 (+) False AMCG00012387
AMCG00012386 mRNA upstream 94527 17374960 ~ 17380121 (+) True AMCG00012386
AMCG00012388 mRNA upstream 103095 17369263 ~ 17371553 (+) True AMCG00012388
AMCG00012389 mRNA upstream 184753 17269066 ~ 17289895 (+) True AMCG00012389
AMCG00012377 mRNA upstream 216049 17255412 ~ 17258599 (+) True AMCG00012377
AMCG00012395 mRNA downstream 21357 17497454 ~ 17504572 (+) True AMCG00012395
AMCG00012401 mRNA downstream 33275 17509372 ~ 17522821 (+) True AMCG00012401
AMCG00012396 mRNA downstream 53676 17529773 ~ 17537629 (+) True AMCG00012396
AMCG00012397 mRNA downstream 76489 17552586 ~ 17578771 (+) True AMCG00012397
AMCG00012406 mRNA downstream 105279 17581376 ~ 17598072 (+) True AMCG00012406
TU171552 other upstream 8589 17459484 ~ 17466059 (+) True G136499
TU171338 other upstream 210244 17231376 ~ 17264404 (+) False G136341
TU171333 other upstream 239699 17231376 ~ 17234949 (+) False G136341
TU171339 other upstream 259765 17129774 ~ 17214883 (+) False G136341
TU171630 other downstream 41353 17517450 ~ 17518398 (+) False AMCG00012401
TU171641 other downstream 71271 17547368 ~ 17547968 (+) True G136558
TU171661 other downstream 169544 17645641 ~ 17646905 (+) True G136566
TU171664 other downstream 174670 17650767 ~ 17653462 (+) True G136569
TU171766 other downstream 279323 17755420 ~ 17757687 (+) False AMCG00012417

Expression Profile