RNA id: TU171542


Basic Information

Item Value
RNA id TU171542
length 355
lncRNA type inter_gene
GC content 0.66
exon number 2
gene id G136490
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17419215 ~ 17462685 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGCAGgaagatgTAGTAGTAGTCCTGGCCGCGCTGGAACTCGAACCCCAGCGAGAAGGGGGTGAACAGCTGGATCTTCTCAGAGAAGCGCACGGGCCCGTGGGGGGCGAAGGGCCGGCTGCACTCCCAGCGCTTGAAGGCGGGGGGGCTGTCGCGGCAGCCCCGGTACCCCCCCGCGCTCACCAGGTACAGCGTGAACAGCTCGGGCCCCGTGGGGGGCAGCGGGGGGCCGTCGGGCGGGTAGTGGGGGCAGTAGATGTCCAGGTAGTCGTTGATATGCACCTGGATGTGGAAATCCCCCTGGgacagcctgagagagagagcgaggggttaatacagacagcctgagagagag

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171521 lncRNA upstream 16855 17402019 ~ 17402360 (+) True G136486
TU171518 lncRNA upstream 30416 17384936 ~ 17388799 (+) False AMCG00012387
TU171519 lncRNA upstream 30416 17385281 ~ 17388799 (+) False AMCG00012387
TU171517 lncRNA upstream 30416 17385316 ~ 17388799 (+) True AMCG00012387
TU171486 lncRNA upstream 78479 17339578 ~ 17340736 (+) True G136458
TU171524 lncRNA downstream 11963 17474648 ~ 17476097 (+) True G136489
TU171533 lncRNA downstream 11963 17474648 ~ 17476097 (+) False G136489
TU171617 lncRNA downstream 25665 17488350 ~ 17488827 (+) True G136538
TU171618 lncRNA downstream 26634 17489319 ~ 17489544 (+) True G136539
TU171659 lncRNA downstream 160428 17623113 ~ 17635961 (+) True G136564
AMCG00012387 mRNA upstream 30543 17385560 ~ 17388672 (+) False AMCG00012387
AMCG00012386 mRNA upstream 39094 17374960 ~ 17380121 (+) True AMCG00012386
AMCG00012388 mRNA upstream 47662 17369263 ~ 17371553 (+) True AMCG00012388
AMCG00012389 mRNA upstream 129320 17269066 ~ 17289895 (+) True AMCG00012389
AMCG00012377 mRNA upstream 160616 17255412 ~ 17258599 (+) True AMCG00012377
AMCG00012395 mRNA downstream 34769 17497454 ~ 17504572 (+) True AMCG00012395
AMCG00012401 mRNA downstream 46687 17509372 ~ 17522821 (+) True AMCG00012401
AMCG00012396 mRNA downstream 67088 17529773 ~ 17537629 (+) True AMCG00012396
AMCG00012397 mRNA downstream 89901 17552586 ~ 17578771 (+) True AMCG00012397
AMCG00012406 mRNA downstream 118691 17581376 ~ 17598072 (+) True AMCG00012406
TU171338 other upstream 154811 17231376 ~ 17264404 (+) False G136341
TU171333 other upstream 184266 17231376 ~ 17234949 (+) False G136341
TU171339 other upstream 204332 17129774 ~ 17214883 (+) False G136341
TU171331 other upstream 284385 17129980 ~ 17134830 (+) True G136341
TU171327 other upstream 289876 17126013 ~ 17129339 (+) True AMCG00012374
TU171527 other downstream 11963 17474648 ~ 17476097 (+) False G136489
TU171630 other downstream 54765 17517450 ~ 17518398 (+) False AMCG00012401
TU171641 other downstream 84683 17547368 ~ 17547968 (+) True G136558
TU171661 other downstream 182956 17645641 ~ 17646905 (+) True G136566
TU171664 other downstream 188082 17650767 ~ 17653462 (+) True G136569

Expression Profile