RNA id: TU171574


Basic Information

Item Value
RNA id TU171574
length 388
lncRNA type inter_gene
GC content 0.64
exon number 1
gene id G136517
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17401979 ~ 17402366 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCCACCGCGATCGCACAGCACCGGGTCCCAACCGGCCCGCAGACGCACAGCACACGCACCCTGCGGCCGGCGAGGCACTCACTTGGGGTTGCTGCTGTTCCAGTACACGCTGTGCCTCTCCGCCGCGGCGACCCCCGCAGCCACGGCCACGCACACCATCCACAACACGTCCATCGCGGCGTGCGGGTAGAGCAGGGAGGCGGTGCTGTGATGCAGACCCACCGCAACACGGACAGATAGCAGCAAAACAACGACGACGACGACACAAAAAGCGAGTCCCAGTTCTCAATGTCCTGCAGTGCAAACAAACACGGGAGATCAGACGCGCTTCCAGCACCGGCTCACTTCTGCTGAGCCCGACCTCGGGCCATCTGGTTTTGTTCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171498 lncRNA downstream 50068 17350820 ~ 17351911 (-) True G136469
TU171500 lncRNA downstream 83500 17314908 ~ 17318479 (-) True G136470
TU171477 lncRNA downstream 91929 17302926 ~ 17310050 (-) True G136450
TU171463 lncRNA downstream 111583 17290140 ~ 17290396 (-) True G136437
TU171461 lncRNA downstream 111896 17289099 ~ 17290083 (-) True G136435
TU171575 lncRNA upstream 71 17402437 ~ 17402721 (-) True G136518
TU171591 lncRNA upstream 13561 17415927 ~ 17416475 (-) True G136521
TU171601 lncRNA upstream 45164 17447530 ~ 17448098 (-) True G136525
TU171614 lncRNA upstream 65523 17467889 ~ 17469776 (-) True G136536
TU171588 lncRNA upstream 72282 17474648 ~ 17479465 (-) False AMCG00012392
AMCG00012391 mRNA downstream 21045 17380656 ~ 17380934 (-) False AMCG00012391
AMCG00012390 mRNA downstream 37530 17344354 ~ 17364449 (-) True AMCG00012390
AMCG00012383 mRNA downstream 134668 17264763 ~ 17267311 (-) True AMCG00012383
AMCG00012384 mRNA downstream 147465 17246090 ~ 17254514 (-) True AMCG00012384
AMCG00012385 mRNA downstream 184340 17208815 ~ 17217639 (-) True AMCG00012385
AMCG00012393 mRNA upstream 15133 17417499 ~ 17423232 (-) False AMCG00012393
AMCG00012394 mRNA upstream 57557 17459923 ~ 17465336 (-) True AMCG00012394
AMCG00012392 mRNA upstream 73008 17475374 ~ 17483359 (-) True AMCG00012392
AMCG00012399 mRNA upstream 105558 17507924 ~ 17511092 (-) True AMCG00012399
AMCG00012398 mRNA upstream 117289 17519655 ~ 17523079 (-) True AMCG00012398
TU171572 other downstream 20384 17380180 ~ 17381595 (-) True AMCG00012391
TU171426 other downstream 159152 17233928 ~ 17242827 (-) True G136408
TU171433 other downstream 187016 17213844 ~ 17214963 (-) False AMCG00012385
TU171434 other downstream 190929 17208778 ~ 17211050 (-) False AMCG00012385
TU171432 other downstream 198746 17201774 ~ 17203233 (-) True G136412
TU171593 other upstream 14208 17416574 ~ 17434113 (-) True AMCG00012393
TU171623 other upstream 101252 17503618 ~ 17503986 (-) True G136544
TU171745 other upstream 283966 17686332 ~ 17688512 (-) True G136625
TU171807 other upstream 318360 17720726 ~ 17724068 (-) True G136666
TU171825 other upstream 357613 17759979 ~ 17761454 (-) False AMCG00012416

Expression Profile