RNA id: TU171591


Basic Information

Item Value
RNA id TU171591
length 525
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G136521
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17415927 ~ 17416475 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cGGGAGGGAAGGGGCGGTCTTTAACCCGAAGATGTGTTGGCGTCTCAGAGGAGGGACACTGAGACGCAGCACTCTTCAAATGTTGCACTTAACTAAGACacgagagtgagagagggagagagagtgagagagagagagagagagagagagagagagagtgagagtgagagtgagtgagagagagagagagagagagtgagtgagagagagagagagagagtgtgtgtgagagagagagagatgaaaactAAAGCATTTATTAACGAGACGGACAGTGACTCAACCATGTTTACGTTTCTGCGCGTTTCTGCAAAAGTGGACTTGAATCTGCTGGAAAGACAataaagcaacaataacaacGACAACAGCAATGCTGCGGCGGCCGACGCGGCCGAAAACAATACTTTCGTGAGTTGTCTTCATCGTTCATCATGGAGGTGGAAGGTTTAAGCAAATAATAGAACTATTCTTCTTCATGAAAACCGTAAGAATTATAAGATGAATAAATTCTAATTCATAAGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171575 lncRNA downstream 13206 17402437 ~ 17402721 (-) True G136518
TU171574 lncRNA downstream 13561 17401979 ~ 17402366 (-) True G136517
TU171498 lncRNA downstream 64016 17350820 ~ 17351911 (-) True G136469
TU171500 lncRNA downstream 97448 17314908 ~ 17318479 (-) True G136470
TU171477 lncRNA downstream 105877 17302926 ~ 17310050 (-) True G136450
TU171601 lncRNA upstream 31055 17447530 ~ 17448098 (-) True G136525
TU171614 lncRNA upstream 51414 17467889 ~ 17469776 (-) True G136536
TU171588 lncRNA upstream 58173 17474648 ~ 17479465 (-) False AMCG00012392
TU171624 lncRNA upstream 87708 17504183 ~ 17505377 (-) True G136545
TU171678 lncRNA upstream 97105 17513580 ~ 17514289 (-) True G136574
AMCG00012391 mRNA downstream 34993 17380656 ~ 17380934 (-) False AMCG00012391
AMCG00012390 mRNA downstream 51478 17344354 ~ 17364449 (-) True AMCG00012390
AMCG00012383 mRNA downstream 148616 17264763 ~ 17267311 (-) True AMCG00012383
AMCG00012384 mRNA downstream 161413 17246090 ~ 17254514 (-) True AMCG00012384
AMCG00012385 mRNA downstream 198288 17208815 ~ 17217639 (-) True AMCG00012385
AMCG00012393 mRNA upstream 1024 17417499 ~ 17423232 (-) False AMCG00012393
AMCG00012394 mRNA upstream 43448 17459923 ~ 17465336 (-) True AMCG00012394
AMCG00012392 mRNA upstream 58899 17475374 ~ 17483359 (-) True AMCG00012392
AMCG00012399 mRNA upstream 91449 17507924 ~ 17511092 (-) True AMCG00012399
AMCG00012398 mRNA upstream 103180 17519655 ~ 17523079 (-) True AMCG00012398
TU171572 other downstream 34332 17380180 ~ 17381595 (-) True AMCG00012391
TU171426 other downstream 173100 17233928 ~ 17242827 (-) True G136408
TU171433 other downstream 200964 17213844 ~ 17214963 (-) False AMCG00012385
TU171434 other downstream 204877 17208778 ~ 17211050 (-) False AMCG00012385
TU171432 other downstream 212694 17201774 ~ 17203233 (-) True G136412
TU171593 other upstream 99 17416574 ~ 17434113 (-) True AMCG00012393
TU171623 other upstream 87143 17503618 ~ 17503986 (-) True G136544
TU171745 other upstream 269857 17686332 ~ 17688512 (-) True G136625
TU171807 other upstream 304251 17720726 ~ 17724068 (-) True G136666
TU171825 other upstream 343504 17759979 ~ 17761454 (-) False AMCG00012416

Expression Profile