RNA id: TU171614


Basic Information

Item Value
RNA id TU171614
length 1195
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G136536
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17467889 ~ 17469776 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCCCCCTCACCTCAgtgtctgttttctctctctttcactgttGTTTAATGCATTATATCCCTCTTTCTCTCGCCTGTCTCCCACTCTTTTTTTCTCACACTTGGCCACAgactccctttctccctctgcctctgtcCCTGTCTCGGTCTGTCATTCTCCACCTctctttttgtctctctctttctctccctctccccctctttctttttctgtttctcccaCCGCTTACCATGTTgcctgccccctccctctctctccctcgctctccctGTCGAAGTGCACTGGGGACATTAATCAGTGTTGCGCAGGCGTCAGTGCGGATCCTCTGTGTGCACCTGTATTAACCTCCCCTCCCGCTCTCTCCCCTGCTTTTTCAGCCACAAGATCGAAGGAGGCAGTCAAAGCAATTACTCCAGCCCCCCACAGTGCAGCAACCTCAGCACTGAAAACCCCCCCGTCCCTCCTCGTCCTCACCCTGCCCCTCCTGCTCCAGCACTGAGACACCGACACGGGGCGCGAGGGGGACGGAGACGAAGACACTGAGACTGCCCTAAATGCCCCACAGACACCATCACTCCCCTTGTTACCCCCTCTAAAGACAAACTGCCCCACCACAGACACTGAGCCACTATAGTTACCCCCAGAAACACTGAGTCACTGTTATTGCCCTTTTTACCCCCACAGAGACACTCACAACTGCCCCCCAGGAAGATAATCTTAAActaccccctgccccccccacaacaCCCCCACAACTGCAGCACTTAAAATTACTGTAGATCAATCTCTTGATCAGAACTGTCTGTCTGTagttccctctctccctccctctccctctccctctccctctctcagagcAGTACAGCATGTCAGAAACACTGTCTACTGTCCTGCACATTACTGAAGCGCTTTTTGGGGACACAAATGGTAGAATCTGGTTTGGCTCCTGATTCAGTCTGGTTTGAGACCACACTGTGTGAACTTCACTTTGGTGTCTGTTCTTAATTGTGTTCAATTTGGTCAGAATTTGAATCGATCATTGCAGTTGTAtttggtggtgtgtgtgtgtatatatatatatatgtatatatatatttttttgtatatatatatttgtaaaccgaactgtttttttttttcacattttagtgAAGCCTTAATTTGACCTCTTCTGTGAAGAGTGTGATGTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171601 lncRNA downstream 19791 17447530 ~ 17448098 (-) True G136525
TU171591 lncRNA downstream 51414 17415927 ~ 17416475 (-) True G136521
TU171575 lncRNA downstream 65168 17402437 ~ 17402721 (-) True G136518
TU171574 lncRNA downstream 65523 17401979 ~ 17402366 (-) True G136517
TU171498 lncRNA downstream 115978 17350820 ~ 17351911 (-) True G136469
TU171588 lncRNA upstream 4872 17474648 ~ 17479465 (-) False AMCG00012392
TU171624 lncRNA upstream 34407 17504183 ~ 17505377 (-) True G136545
TU171678 lncRNA upstream 43804 17513580 ~ 17514289 (-) True G136574
TU171686 lncRNA upstream 77590 17547366 ~ 17547973 (-) True G136581
TU171695 lncRNA upstream 108678 17578454 ~ 17579296 (-) True G136589
AMCG00012394 mRNA downstream 2553 17459923 ~ 17465336 (-) True AMCG00012394
AMCG00012393 mRNA downstream 44657 17417499 ~ 17423232 (-) False AMCG00012393
AMCG00012391 mRNA downstream 86955 17380656 ~ 17380934 (-) False AMCG00012391
AMCG00012390 mRNA downstream 103440 17344354 ~ 17364449 (-) True AMCG00012390
AMCG00012383 mRNA downstream 200578 17264763 ~ 17267311 (-) True AMCG00012383
AMCG00012392 mRNA upstream 5598 17475374 ~ 17483359 (-) True AMCG00012392
AMCG00012399 mRNA upstream 38148 17507924 ~ 17511092 (-) True AMCG00012399
AMCG00012398 mRNA upstream 49879 17519655 ~ 17523079 (-) True AMCG00012398
AMCG00012400 mRNA upstream 57099 17526875 ~ 17527534 (-) True AMCG00012400
AMCG00012409 mRNA upstream 165081 17634857 ~ 17635861 (-) True AMCG00012409
TU171593 other downstream 33776 17416574 ~ 17434113 (-) True AMCG00012393
TU171572 other downstream 86294 17380180 ~ 17381595 (-) True AMCG00012391
TU171426 other downstream 225062 17233928 ~ 17242827 (-) True G136408
TU171433 other downstream 252926 17213844 ~ 17214963 (-) False AMCG00012385
TU171434 other downstream 256839 17208778 ~ 17211050 (-) False AMCG00012385
TU171623 other upstream 33842 17503618 ~ 17503986 (-) True G136544
TU171745 other upstream 216556 17686332 ~ 17688512 (-) True G136625
TU171807 other upstream 250950 17720726 ~ 17724068 (-) True G136666
TU171825 other upstream 290203 17759979 ~ 17761454 (-) False AMCG00012416
TU171826 other upstream 298284 17768060 ~ 17770966 (-) False AMCG00012414

Expression Profile