RNA id: TU171617


Basic Information

Item Value
RNA id TU171617
length 205
lncRNA type inter_gene
GC content 0.66
exon number 2
gene id G136538
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17488350 ~ 17488827 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaggaggccaGAGGGGTTGTGGGGCTGATGCTGAAGGACACCCACCCCCAGTCCCCCTTCTTCTGGGCCATTCCCCTCTCACAGgaGCGCCATGAGCAGATGCTGCAGTTGTTCTCATGTCTGGCGGAGGTGGAGGGCCTACAGCTGCCCCTGCCCCCTTGGGAGGCCCAGCCAGGGTGCAGGGTGCTGGGGGAGCTGCAGCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171536 lncRNA upstream 12253 17411761 ~ 17476097 (+) False G136489
TU171538 lncRNA upstream 12253 17434229 ~ 17476097 (+) False G136489
TU171524 lncRNA upstream 12253 17474648 ~ 17476097 (+) True G136489
TU171533 lncRNA upstream 12253 17474648 ~ 17476097 (+) False G136489
TU171542 lncRNA upstream 25665 17419215 ~ 17462685 (+) True G136490
TU171618 lncRNA downstream 492 17489319 ~ 17489544 (+) True G136539
TU171659 lncRNA downstream 134286 17623113 ~ 17635961 (+) True G136564
TU171663 lncRNA downstream 159801 17648628 ~ 17649107 (+) True G136568
TU171665 lncRNA downstream 160438 17649265 ~ 17653462 (+) False G136569
TU171670 lncRNA downstream 174606 17663433 ~ 17664170 (+) True G136571
AMCG00012387 mRNA upstream 99678 17385560 ~ 17388672 (+) False AMCG00012387
AMCG00012386 mRNA upstream 108229 17374960 ~ 17380121 (+) True AMCG00012386
AMCG00012388 mRNA upstream 116797 17369263 ~ 17371553 (+) True AMCG00012388
AMCG00012389 mRNA upstream 198455 17269066 ~ 17289895 (+) True AMCG00012389
AMCG00012377 mRNA upstream 229751 17255412 ~ 17258599 (+) True AMCG00012377
AMCG00012395 mRNA downstream 8627 17497454 ~ 17504572 (+) True AMCG00012395
AMCG00012401 mRNA downstream 20545 17509372 ~ 17522821 (+) True AMCG00012401
AMCG00012396 mRNA downstream 40946 17529773 ~ 17537629 (+) True AMCG00012396
AMCG00012397 mRNA downstream 63759 17552586 ~ 17578771 (+) True AMCG00012397
AMCG00012406 mRNA downstream 92549 17581376 ~ 17598072 (+) True AMCG00012406
TU171527 other upstream 12253 17474648 ~ 17476097 (+) False G136489
TU171552 other upstream 22291 17459484 ~ 17466059 (+) True G136499
TU171338 other upstream 223946 17231376 ~ 17264404 (+) False G136341
TU171333 other upstream 253401 17231376 ~ 17234949 (+) False G136341
TU171339 other upstream 273467 17129774 ~ 17214883 (+) False G136341
TU171630 other downstream 28623 17517450 ~ 17518398 (+) False AMCG00012401
TU171641 other downstream 58541 17547368 ~ 17547968 (+) True G136558
TU171661 other downstream 156814 17645641 ~ 17646905 (+) True G136566
TU171664 other downstream 161940 17650767 ~ 17653462 (+) True G136569
TU171766 other downstream 266593 17755420 ~ 17757687 (+) False AMCG00012417

Expression Profile