RNA id: TU171624


Basic Information

Item Value
RNA id TU171624
length 1195
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G136545
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17504183 ~ 17505377 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGTTTGGAAAGAAGGAAACCTCACTGAACAGCAGATGTACACTAGAGTTGGACATTCATGGTAAgaaagatggagggagggagggagggagggaaaggggtAGAAAGATGAGAGGGGTAAAGGGACAGGTTTGGTGAAAAGGTATAAAGAAAAGTGGAGGGAGagggttaaagaaaaaaataagacattaaaaaaaacaatacacactgTGGACAAAAGTATTGGGACGGCAACCAAAATACCCCAAATTGACCGCCGGTCCCAGTGTGTGTGACTGGGAGGGAGCtgggcagtgcagtgcagtttgtacagcacagaggaaagagagagaggggcaaagAAGACCCATCCCCCCATCCATACCCCaaaagaacagagagagagcagactGGAATGGAAAAGAGATATAAAAGGACCCCCCTGCAAGCTTCCTCACACACGCtggctcgctctctctctctcagattccGCGGTCCTTCCTCCTCTAGGACTCTATTGGCTGCTGTCGGCCCCGCCCCCTCCTCCTGTGTATAGGGTACCCTCTGTATTCCGATTGGCTGGTCACAGCCGCCTGGCAACGCTTTGTCCTTTGCTTCTGATTGGTGAATGTCTCAATCCAGTCAGACGCAGCCATCACAGTTTCCTTGGTCCTGATTGGACTGTGCCGTTTCTCTTCTTCAGTGGTGGAAAAGTGGTGAGGAGGGGTgtggggatgtgtgtgtgattggcCCTCGTTCCTGTCATTCTGGTAGGAGGGGCGGCGGAGTAGGAGGGGGCGGGGCCGGGAGGAGCCCTGGGATTGGTCACTCGGGGCTGTGGACGATGGTCTTGGCGGTGTAGTTCTGGAACAGCGGCTGCAGGAACATGCCGACGGTGCCGAACACGCACACGAACACAAAGATCCACAGGAACAGCCGGTCGATCACCATCGCAACGTACTTCCAGTCCTCGCTCACCTGCAGCAGAGAGCAAGGGgtcacacaccaacacacacaccgaaacacacatgctgacacacataatgacacacacacatactgacacactaacacacactgacacaaactgACATACTGGCACAGGCTGActcacacatactgacacacaggcatacacacatactgacacattgtcacacacacttactgagacgcacacacacacacactgaaccaCACGCAGATgcattgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171588 lncRNA downstream 24718 17474648 ~ 17479465 (-) False AMCG00012392
TU171614 lncRNA downstream 34407 17467889 ~ 17469776 (-) True G136536
TU171601 lncRNA downstream 56085 17447530 ~ 17448098 (-) True G136525
TU171591 lncRNA downstream 87708 17415927 ~ 17416475 (-) True G136521
TU171575 lncRNA downstream 101462 17402437 ~ 17402721 (-) True G136518
TU171678 lncRNA upstream 8203 17513580 ~ 17514289 (-) True G136574
TU171686 lncRNA upstream 41989 17547366 ~ 17547973 (-) True G136581
TU171695 lncRNA upstream 73077 17578454 ~ 17579296 (-) True G136589
TU171709 lncRNA upstream 104115 17609492 ~ 17609910 (-) True G136602
TU171682 lncRNA upstream 114762 17620139 ~ 17621187 (-) True G136578
AMCG00012392 mRNA downstream 20824 17475374 ~ 17483359 (-) True AMCG00012392
AMCG00012394 mRNA downstream 38847 17459923 ~ 17465336 (-) True AMCG00012394
AMCG00012393 mRNA downstream 80951 17417499 ~ 17423232 (-) False AMCG00012393
AMCG00012391 mRNA downstream 123249 17380656 ~ 17380934 (-) False AMCG00012391
AMCG00012390 mRNA downstream 139734 17344354 ~ 17364449 (-) True AMCG00012390
AMCG00012399 mRNA upstream 2547 17507924 ~ 17511092 (-) True AMCG00012399
AMCG00012398 mRNA upstream 14278 17519655 ~ 17523079 (-) True AMCG00012398
AMCG00012400 mRNA upstream 21498 17526875 ~ 17527534 (-) True AMCG00012400
AMCG00012409 mRNA upstream 129480 17634857 ~ 17635861 (-) True AMCG00012409
AMCG00012408 mRNA upstream 141795 17647172 ~ 17649026 (-) True AMCG00012408
TU171623 other downstream 197 17503618 ~ 17503986 (-) True G136544
TU171593 other downstream 70070 17416574 ~ 17434113 (-) True AMCG00012393
TU171572 other downstream 122588 17380180 ~ 17381595 (-) True AMCG00012391
TU171426 other downstream 261356 17233928 ~ 17242827 (-) True G136408
TU171433 other downstream 289220 17213844 ~ 17214963 (-) False AMCG00012385
TU171745 other upstream 180955 17686332 ~ 17688512 (-) True G136625
TU171807 other upstream 215349 17720726 ~ 17724068 (-) True G136666
TU171825 other upstream 254602 17759979 ~ 17761454 (-) False AMCG00012416
TU171826 other upstream 262683 17768060 ~ 17770966 (-) False AMCG00012414
TU171956 other upstream 592803 18098180 ~ 18100627 (-) True AMCG00012437

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU131761 True 3594 TUCP 0.41 7 NC_035907.1 5982935 ~ 6012784 (-)