RNA id: TU171663



Basic Information


Item Value
RNA id TU171663
length 480
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G136568
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17648628 ~ 17649107 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCCGATTCATTTAccagcaacaataacaaaatgaataaagtatattattattagcaatatCTATAGGAGTAGTAGTAGAGCAGTGGTACTATAGTAGTAGCATAATCAGAGGTCAATAGCAAGAGcagcactgaaacactgacactaaattattattcttgGCGTTATTGTACTCACCAGACTTGCCCACATTTTCGGCTCCCAGGAGTAAAATATTAGCCTCCACTTTGTGCTGGTTTCCCTCCATCGTCTTGGTGCTCGGATGGACGCCGGGTTTCACCTGCACAACCATTGGGAAACCGGGCGGTCGGTGAGTGAGTGTCGTTTTCCAGGAGTCTGAGGGGTTCTCGGTAATTCCGTCTGGATCTGTTTTCGCACAGAGCGCAGTCTGTCCGCCGGGCGCCGTGCGGGGCTTATATACCGCAGAGAAAATCTGGAATGCGGTGCTGGCCAATCAGAGCGCAGATCGGGGGGTTGTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU171659 lncRNA upstream 12667 17623113 ~ 17635961 (+) True G136564
TU171618 lncRNA upstream 159084 17489319 ~ 17489544 (+) True G136539
TU171617 lncRNA upstream 159801 17488350 ~ 17488827 (+) True G136538
TU171538 lncRNA upstream 172531 17434229 ~ 17476097 (+) False G136489
TU171665 lncRNA downstream 158 17649265 ~ 17653462 (+) False G136569
TU171670 lncRNA downstream 14326 17663433 ~ 17664170 (+) True G136571
TU171869 lncRNA downstream 251801 17900908 ~ 17901656 (+) True G136718
TU172036 lncRNA downstream 612790 18261897 ~ 18269507 (+) True G136842
TU172043 lncRNA downstream 646108 18295215 ~ 18317076 (+) True G136848
AMCG00012407 mRNA upstream 27441 17614494 ~ 17621187 (+) True AMCG00012407
AMCG00012404 mRNA upstream 38725 17605733 ~ 17609903 (+) True AMCG00012404
AMCG00012406 mRNA upstream 50556 17581376 ~ 17598072 (+) True AMCG00012406
AMCG00012397 mRNA upstream 69857 17552586 ~ 17578771 (+) True AMCG00012397
AMCG00012396 mRNA upstream 110999 17529773 ~ 17537629 (+) True AMCG00012396
AMCG00012405 mRNA downstream 8351 17657458 ~ 17662757 (+) True AMCG00012405
AMCG00012403 mRNA downstream 18236 17667343 ~ 17676356 (+) True AMCG00012403
AMCG00012402 mRNA downstream 27558 17676665 ~ 17679965 (+) True AMCG00012402
AMCG00012410 mRNA downstream 34287 17683394 ~ 17688471 (+) True AMCG00012410
AMCG00012413 mRNA downstream 40011 17689118 ~ 17691283 (+) True AMCG00012413
TU171661 other upstream 1723 17645641 ~ 17646905 (+) True G136566
TU171641 other upstream 100660 17547368 ~ 17547968 (+) True G136558
TU171630 other upstream 130230 17517450 ~ 17518398 (+) False AMCG00012401
TU171527 other upstream 172531 17474648 ~ 17476097 (+) False G136489
TU171552 other upstream 182569 17459484 ~ 17466059 (+) True G136499
TU171664 other downstream 1660 17650767 ~ 17653462 (+) True G136569
TU171766 other downstream 106313 17755420 ~ 17757687 (+) False AMCG00012417
TU171770 other downstream 115038 17764145 ~ 17767531 (+) True G136641
TU171771 other downstream 115038 17764145 ~ 17766491 (+) False G136641
TU171753 other downstream 143144 17792251 ~ 17795217 (+) False AMCG00012423

Expression Profile