RNA id: TU171665



Basic Information


Item Value
RNA id TU171665
length 885
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G136569
representative False

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17649265 ~ 17653462 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGCGTCCGCACATGCGCctacagcacaaacacagaggaggtgagagagggggagaaaaacggagggagagggggagtaCTTGTGAAATATAGCAGCAGGGGAGGCACGTGATGTTGCCCAAGGAAATCGCCAGGCTGGTGCCCAAGACCCATCTGATGTCAGAGACGGAGTGGCGCAATCTGGGCGTGCAGCAGAGCCAGGGCTGGGTGCACTACATGATCCACGAGCCagAGCCACATATCCTTCTCTTCAGGAGACCCATGCCCCAGCCTGTTAGCAAGtaaaagagagagggatggatggagggagggagacaggagtgatggagggagagatggaCTGAATTTGACTCGGAGGCTGAAGAGATGTGAGGAGGAGGCATGAAGGCACTTCTCCCTGCACTTCAGCCTCAGTCCTGTAGGCAGAGTACCTCTGGGAGGAGCTGGACCAGCTGAATCTGGGTCTCTGCGCCggacacacctctctctctgtgctacTCCAGGACCTGCGCGGCGCTTGTAGAATtgtgtactgtactatattgcattttattatagtatattgtactgttgtgtattgtgctgggctgcacgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagaaagagagagagagagagagagaggtgcgtCCATCCTTTACCCATGCCCTCTCTGTCTCGTGAAGATGACAGATGTGGGTTTGAGTTAAACAACTAAAACATagagttaattaaaataatgttttgtgcCTTTTCCAAAATAACTGTAAAGCTGGTCTGTAACAATAACCATTACgaataaatctattttttgaGAGAAAGACAGTGGGTTTTTGTCGTTTGCAGCTGTTCCAGTGTAAGAAACACAGGCGATTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU171663 lncRNA upstream 158 17648628 ~ 17649107 (+) True G136568
TU171659 lncRNA upstream 13304 17623113 ~ 17635961 (+) True G136564
TU171618 lncRNA upstream 159721 17489319 ~ 17489544 (+) True G136539
TU171617 lncRNA upstream 160438 17488350 ~ 17488827 (+) True G136538
TU171524 lncRNA upstream 173168 17474648 ~ 17476097 (+) True G136489
TU171670 lncRNA downstream 9971 17663433 ~ 17664170 (+) True G136571
TU171869 lncRNA downstream 247446 17900908 ~ 17901656 (+) True G136718
TU172036 lncRNA downstream 608435 18261897 ~ 18269507 (+) True G136842
TU172043 lncRNA downstream 641753 18295215 ~ 18317076 (+) True G136848
TU172070 lncRNA downstream 780108 18433570 ~ 18470784 (+) False G136866
AMCG00012407 mRNA upstream 28078 17614494 ~ 17621187 (+) True AMCG00012407
AMCG00012404 mRNA upstream 39362 17605733 ~ 17609903 (+) True AMCG00012404
AMCG00012406 mRNA upstream 51193 17581376 ~ 17598072 (+) True AMCG00012406
AMCG00012397 mRNA upstream 70494 17552586 ~ 17578771 (+) True AMCG00012397
AMCG00012396 mRNA upstream 111636 17529773 ~ 17537629 (+) True AMCG00012396
AMCG00012405 mRNA downstream 3996 17657458 ~ 17662757 (+) True AMCG00012405
AMCG00012403 mRNA downstream 13881 17667343 ~ 17676356 (+) True AMCG00012403
AMCG00012402 mRNA downstream 23203 17676665 ~ 17679965 (+) True AMCG00012402
AMCG00012410 mRNA downstream 29932 17683394 ~ 17688471 (+) True AMCG00012410
AMCG00012413 mRNA downstream 35656 17689118 ~ 17691283 (+) True AMCG00012413
TU171661 other upstream 2360 17645641 ~ 17646905 (+) True G136566
TU171641 other upstream 101297 17547368 ~ 17547968 (+) True G136558
TU171630 other upstream 130867 17517450 ~ 17518398 (+) False AMCG00012401
TU171527 other upstream 173168 17474648 ~ 17476097 (+) False G136489
TU171552 other upstream 183206 17459484 ~ 17466059 (+) True G136499
TU171766 other downstream 101958 17755420 ~ 17757687 (+) False AMCG00012417
TU171770 other downstream 110683 17764145 ~ 17767531 (+) True G136641
TU171771 other downstream 110683 17764145 ~ 17766491 (+) False G136641
TU171753 other downstream 138789 17792251 ~ 17795217 (+) False AMCG00012423
TU171793 other downstream 187471 17840933 ~ 17843921 (+) True G136658

Expression Profile