RNA id: TU171682


Basic Information

Item Value
RNA id TU171682
length 1015
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G136578
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17620139 ~ 17621187 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAATTCAACCCTTTTATTTAACtcattaacacaaaataaattaggggaaaaacacaattacagacacatacaaacagacagacaaagtgGGAACTGGGTTCTATAATATGGCCCCTTATGAAAAACAACGCAGGCTTTAGTGCTTACAGTAAAGAGAGTGGGGGGGCATTCGCACTGTggactatactgcactgtactgtagtatactgcactgtactgtaatatactgcactttactgtgttATACTGCGCCGTACTGTATTATAGTGCACTGTCCTATACTGTACTGACCTAAACTATGCTACACTACACTCTATTCTTTTGGTATCTGTCCTCCGTCCTCCTGACatcatttcctttctttattcagaaaaaaaaaccgACAACAAAAAATCATGCCCAAACACCAGTTAAAGGGGAGGATGAGGAACAGAACAGGGACAGGTGTTATCTGTTAAGGCAAGTTTAAAGGGGAGGTCAGTGAGCCCCCTTCTCCCCGaatcccctccctctctctctctctctcctccccttctCTATCACTTCATTTCCCGTTTCCTGCCTCAAAATCTCAGAAGCACCggactgtctctctctgcttcacCCCCTTACCTGTCATTTTCTCAGTttcttctctttcctctctctctctctctctctctctcccactttcTCTTGGTCCCTCTCTCCTGCCATCACTCACTTTCTCTGACTTTCCTGGTCTCTGCAGATCTTcaaatccccccacccccaggttctctcctctctctcctccatcCCCCACTCCCTCAGTGCTGGGGGTGTTTTTTCCTGCGGAAGGGCGCTCGGAGGCGTGTCCAGAGGGAGGCGTGGCCCCGGGTCTTGCTGTCCCCTGATTGGGCGGCTTCGTTCTCGCGGCGTCGGATCTGGCGCACCAGGGCGGCGAAGACCTCGTCGATGTTGTGCCGGTAGGCGGCCGACGTCTCGAAAAACGGGCACTGGAACTCCCTCGCCAGGCTCTTGCCCTCCTCTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171709 lncRNA downstream 10229 17609492 ~ 17609910 (-) True G136602
TU171695 lncRNA downstream 40843 17578454 ~ 17579296 (-) True G136589
TU171686 lncRNA downstream 72166 17547366 ~ 17547973 (-) True G136581
TU171678 lncRNA downstream 105850 17513580 ~ 17514289 (-) True G136574
TU171624 lncRNA downstream 114762 17504183 ~ 17505377 (-) True G136545
TU171713 lncRNA upstream 7700 17628887 ~ 17630828 (-) True G136605
TU171717 lncRNA upstream 22324 17643511 ~ 17643758 (-) True G136607
TU171729 lncRNA upstream 42268 17663455 ~ 17664170 (-) True G136616
TU171737 lncRNA upstream 61020 17682207 ~ 17684183 (-) True G136623
TU171805 lncRNA upstream 99539 17720726 ~ 17723415 (-) False G136666
AMCG00012400 mRNA downstream 92605 17526875 ~ 17527534 (-) True AMCG00012400
AMCG00012398 mRNA downstream 97060 17519655 ~ 17523079 (-) True AMCG00012398
AMCG00012399 mRNA downstream 109047 17507924 ~ 17511092 (-) True AMCG00012399
AMCG00012392 mRNA downstream 136780 17475374 ~ 17483359 (-) True AMCG00012392
AMCG00012394 mRNA downstream 154803 17459923 ~ 17465336 (-) True AMCG00012394
AMCG00012409 mRNA upstream 13670 17634857 ~ 17635861 (-) True AMCG00012409
AMCG00012408 mRNA upstream 25985 17647172 ~ 17649026 (-) True AMCG00012408
AMCG00012415 mRNA upstream 70554 17691741 ~ 17697285 (-) True AMCG00012415
AMCG00012416 mRNA upstream 136147 17757334 ~ 17764561 (-) True AMCG00012416
AMCG00012414 mRNA upstream 146223 17767410 ~ 17779122 (-) True AMCG00012414
TU171623 other downstream 116153 17503618 ~ 17503986 (-) True G136544
TU171593 other downstream 186026 17416574 ~ 17434113 (-) True AMCG00012393
TU171572 other downstream 238544 17380180 ~ 17381595 (-) True AMCG00012391
TU171426 other downstream 377312 17233928 ~ 17242827 (-) True G136408
TU171433 other downstream 405176 17213844 ~ 17214963 (-) False AMCG00012385
TU171745 other upstream 65145 17686332 ~ 17688512 (-) True G136625
TU171807 other upstream 99539 17720726 ~ 17724068 (-) True G136666
TU171825 other upstream 138792 17759979 ~ 17761454 (-) False AMCG00012416
TU171826 other upstream 146873 17768060 ~ 17770966 (-) False AMCG00012414
TU171956 other upstream 476993 18098180 ~ 18100627 (-) True AMCG00012437

Expression Profile