RNA id: TU171695


Basic Information

Item Value
RNA id TU171695
length 780
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id G136589
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17578454 ~ 17579296 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNCAGTGGTGTGAGTAGGGAAACATGACTctagaatacacacacacacacaacgaaCGACAACGAAAAAAGATAATACAAAAGAACAGGAGTCCCGGCACAGTGCGGTGACAGTGGGGACATCGCGCCCAGCCCCACGAGGCCTCTCCCTCCACAAAATCCCCCACGTCCTGTGCCAGCGTCCCCCGTCTCTCCCCTGCACCGTCCCATTCACACGCAGTGTCATTGTGTGTCCGCCAGAGGGAGCTGCCTGCCTCCACCCCCGCACGTGCGGCGCTGTGCAGGAGTGTGTGGGCGTGTGAGAGcatgtgcgtgtcagtgtgcgCGATtatgtgcgagtgtgtgtgacgttgtgtgtgcctgtctgtgcAGCTGTGCGTcgagtgtgtgattgtgtgtgggGAGTGTTGCGAGTGGGCGCTGTTTTTCGCATcacccctctcctcctctcctccccatcttctcttcatctctctgccttcctcttccctccttccctctctctctttctctctctctctctcctcacactGCGGCGCTGCTCTCCCCCAGCAGCCAGTACGTGGTCATCTTCCCTTTGCCCTTCATCTCCACCTCTCCGCGCAGCTCCAGCTCGAACCCGCTGAGCTCCTGTAGCACCACGTGGGTCGCCGCCGACACGTGGATCTTCAGCGCTGCAGCAGAGCACAGGGCACAGggcacaggacacaggacacaggacacaggacacaggacacacgacacaGGACACACGACACAGGGCACAGGGCACAGGACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171686 lncRNA downstream 30481 17547366 ~ 17547973 (-) True G136581
TU171678 lncRNA downstream 64165 17513580 ~ 17514289 (-) True G136574
TU171624 lncRNA downstream 73077 17504183 ~ 17505377 (-) True G136545
TU171588 lncRNA downstream 98989 17474648 ~ 17479465 (-) False AMCG00012392
TU171614 lncRNA downstream 108678 17467889 ~ 17469776 (-) True G136536
TU171709 lncRNA upstream 30196 17609492 ~ 17609910 (-) True G136602
TU171682 lncRNA upstream 40843 17620139 ~ 17621187 (-) True G136578
TU171713 lncRNA upstream 49591 17628887 ~ 17630828 (-) True G136605
TU171717 lncRNA upstream 64215 17643511 ~ 17643758 (-) True G136607
TU171729 lncRNA upstream 84159 17663455 ~ 17664170 (-) True G136616
AMCG00012400 mRNA downstream 50920 17526875 ~ 17527534 (-) True AMCG00012400
AMCG00012398 mRNA downstream 55375 17519655 ~ 17523079 (-) True AMCG00012398
AMCG00012399 mRNA downstream 67362 17507924 ~ 17511092 (-) True AMCG00012399
AMCG00012392 mRNA downstream 95095 17475374 ~ 17483359 (-) True AMCG00012392
AMCG00012394 mRNA downstream 113118 17459923 ~ 17465336 (-) True AMCG00012394
AMCG00012409 mRNA upstream 55561 17634857 ~ 17635861 (-) True AMCG00012409
AMCG00012408 mRNA upstream 67876 17647172 ~ 17649026 (-) True AMCG00012408
AMCG00012415 mRNA upstream 112445 17691741 ~ 17697285 (-) True AMCG00012415
AMCG00012416 mRNA upstream 178038 17757334 ~ 17764561 (-) True AMCG00012416
AMCG00012414 mRNA upstream 188114 17767410 ~ 17779122 (-) True AMCG00012414
TU171623 other downstream 74468 17503618 ~ 17503986 (-) True G136544
TU171593 other downstream 144341 17416574 ~ 17434113 (-) True AMCG00012393
TU171572 other downstream 196859 17380180 ~ 17381595 (-) True AMCG00012391
TU171426 other downstream 335627 17233928 ~ 17242827 (-) True G136408
TU171433 other downstream 363491 17213844 ~ 17214963 (-) False AMCG00012385
TU171745 other upstream 107036 17686332 ~ 17688512 (-) True G136625
TU171807 other upstream 141430 17720726 ~ 17724068 (-) True G136666
TU171825 other upstream 180683 17759979 ~ 17761454 (-) False AMCG00012416
TU171826 other upstream 188764 17768060 ~ 17770966 (-) False AMCG00012414
TU171956 other upstream 518884 18098180 ~ 18100627 (-) True AMCG00012437

Expression Profile