RNA id: TU171717


Basic Information

Item Value
RNA id TU171717
length 248
lncRNA type inter_gene
GC content 0.70
exon number 1
gene id G136607
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17643511 ~ 17643758 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGTGCTCACCACGCTGCGCCGCTCCTCCGCCGACGCGCTGCTGGCGCCCATCATGCAGCTGGTCACCCAGAGCCAGCGCGCCTTCGAGTACCTGAGCCCCGCCCCACCAAGCGCCCACGCCCACCCCGAGCTGGCCAGTAACGTGGCGGAGACGGCGGAGTAAGGCGTGGGCTTCCACTCCCCActgcctctcctctctcctcctcattcctcccctctcctccttcactcctcccctctcctccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171713 lncRNA downstream 12683 17628887 ~ 17630828 (-) True G136605
TU171682 lncRNA downstream 22324 17620139 ~ 17621187 (-) True G136578
TU171709 lncRNA downstream 33601 17609492 ~ 17609910 (-) True G136602
TU171695 lncRNA downstream 64215 17578454 ~ 17579296 (-) True G136589
TU171686 lncRNA downstream 95538 17547366 ~ 17547973 (-) True G136581
TU171729 lncRNA upstream 19697 17663455 ~ 17664170 (-) True G136616
TU171737 lncRNA upstream 38449 17682207 ~ 17684183 (-) True G136623
TU171805 lncRNA upstream 76968 17720726 ~ 17723415 (-) False G136666
TU171905 lncRNA upstream 268480 17912238 ~ 17971853 (-) True G136746
TU171911 lncRNA upstream 297714 17941472 ~ 17963244 (-) True G136750
AMCG00012409 mRNA downstream 7650 17634857 ~ 17635861 (-) True AMCG00012409
AMCG00012400 mRNA downstream 115977 17526875 ~ 17527534 (-) True AMCG00012400
AMCG00012398 mRNA downstream 120432 17519655 ~ 17523079 (-) True AMCG00012398
AMCG00012399 mRNA downstream 132419 17507924 ~ 17511092 (-) True AMCG00012399
AMCG00012392 mRNA downstream 160152 17475374 ~ 17483359 (-) True AMCG00012392
AMCG00012408 mRNA upstream 3414 17647172 ~ 17649026 (-) True AMCG00012408
AMCG00012415 mRNA upstream 47983 17691741 ~ 17697285 (-) True AMCG00012415
AMCG00012416 mRNA upstream 113576 17757334 ~ 17764561 (-) True AMCG00012416
AMCG00012414 mRNA upstream 123652 17767410 ~ 17779122 (-) True AMCG00012414
AMCG00012419 mRNA upstream 138729 17782487 ~ 17795215 (-) True AMCG00012419
TU171623 other downstream 139525 17503618 ~ 17503986 (-) True G136544
TU171593 other downstream 209398 17416574 ~ 17434113 (-) True AMCG00012393
TU171572 other downstream 261916 17380180 ~ 17381595 (-) True AMCG00012391
TU171426 other downstream 400684 17233928 ~ 17242827 (-) True G136408
TU171433 other downstream 428548 17213844 ~ 17214963 (-) False AMCG00012385
TU171745 other upstream 42574 17686332 ~ 17688512 (-) True G136625
TU171807 other upstream 76968 17720726 ~ 17724068 (-) True G136666
TU171825 other upstream 116221 17759979 ~ 17761454 (-) False AMCG00012416
TU171826 other upstream 124302 17768060 ~ 17770966 (-) False AMCG00012414
TU171956 other upstream 454422 18098180 ~ 18100627 (-) True AMCG00012437

Expression Profile