RNA id: TU171729


Basic Information

Item Value
RNA id TU171729
length 716
lncRNA type inter_gene
GC content 0.62
exon number 1
gene id G136616
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17663455 ~ 17664170 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACACCTCCACCGCCGGCCGCACTCCCGGATCCCCTACCTTTGTTTCTCTTGCTGGGTCCCACCTGCAGCTTGCCCGGCTCGGCCGCCATTAAGAGGACTGGCGCGGCGCTGACATGACAGCGTTTTCGAGGGCGAGAAAACGGGGTGAACAGACCCGGGCGGACGCGGCACACAGCCCCCAAGCGCCCCCTCGGCACCGGAACAGGCCGCGGCAAGAGCTTCCGGGGTCACGGGTGCGCCGGTCCCTGCCTTCCCCGACCCGGGGAGGGAAAACACTCCGGGTCGCTGTAGACCTTGATCCGGGCTGCAGATGCGCtcaaagtcaattaaaatacagcaaacaGCCGTCCTGGGTCAGAGCCGAGTTCATGAACAGGGGatgagagtgagagggagggagaaatgATACTGACCGATGATCACTCCCCCTCCTCAGTGAACACGCATGGATGTCCACCTACAGATGCAGATGCCTGTACAGATACGTGTCCAATAACAGCAGGCCGCCTATATCACAGACGCGGGCGGGCGGGTCAGCGCTGTGTCGGCGGCTGTCGTTGCGTTTGTCGTATTTttccctcccttccttcctACGTTGTTTCGTCCAGCACCTCCTCAACGGAACACCCAAGGTCTCGCTAATCACCCCCACGCCCGCCGGGTCGCCGAAGCCATGTCCCCCCCCTCCGCCGATAACCAGCAACGCGTCCCGCTAG

Function

GO:

id name namespace
GO:0015698 inorganic anion transport biological_process
GO:0006821 chloride transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171717 lncRNA downstream 19697 17643511 ~ 17643758 (-) True G136607
TU171713 lncRNA downstream 32627 17628887 ~ 17630828 (-) True G136605
TU171682 lncRNA downstream 42268 17620139 ~ 17621187 (-) True G136578
TU171709 lncRNA downstream 53545 17609492 ~ 17609910 (-) True G136602
TU171695 lncRNA downstream 84159 17578454 ~ 17579296 (-) True G136589
TU171737 lncRNA upstream 18037 17682207 ~ 17684183 (-) True G136623
TU171805 lncRNA upstream 56556 17720726 ~ 17723415 (-) False G136666
TU171905 lncRNA upstream 248068 17912238 ~ 17971853 (-) True G136746
TU171911 lncRNA upstream 277302 17941472 ~ 17963244 (-) True G136750
TU172002 lncRNA upstream 448506 18112676 ~ 18112903 (-) True G136820
AMCG00012408 mRNA downstream 14429 17647172 ~ 17649026 (-) True AMCG00012408
AMCG00012409 mRNA downstream 27594 17634857 ~ 17635861 (-) True AMCG00012409
AMCG00012400 mRNA downstream 135921 17526875 ~ 17527534 (-) True AMCG00012400
AMCG00012398 mRNA downstream 140376 17519655 ~ 17523079 (-) True AMCG00012398
AMCG00012399 mRNA downstream 152363 17507924 ~ 17511092 (-) True AMCG00012399
AMCG00012415 mRNA upstream 27571 17691741 ~ 17697285 (-) True AMCG00012415
AMCG00012416 mRNA upstream 93164 17757334 ~ 17764561 (-) True AMCG00012416
AMCG00012414 mRNA upstream 103240 17767410 ~ 17779122 (-) True AMCG00012414
AMCG00012419 mRNA upstream 118317 17782487 ~ 17795215 (-) True AMCG00012419
AMCG00012421 mRNA upstream 164837 17829007 ~ 17842851 (-) True AMCG00012421
TU171623 other downstream 159469 17503618 ~ 17503986 (-) True G136544
TU171593 other downstream 229342 17416574 ~ 17434113 (-) True AMCG00012393
TU171572 other downstream 281860 17380180 ~ 17381595 (-) True AMCG00012391
TU171426 other downstream 420628 17233928 ~ 17242827 (-) True G136408
TU171433 other downstream 448492 17213844 ~ 17214963 (-) False AMCG00012385
TU171745 other upstream 22162 17686332 ~ 17688512 (-) True G136625
TU171807 other upstream 56556 17720726 ~ 17724068 (-) True G136666
TU171825 other upstream 95809 17759979 ~ 17761454 (-) False AMCG00012416
TU171826 other upstream 103890 17768060 ~ 17770966 (-) False AMCG00012414
TU171956 other upstream 434010 18098180 ~ 18100627 (-) True AMCG00012437

Expression Profile