RNA id: TU171737


Basic Information

Item Value
RNA id TU171737
length 897
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G136623
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17682207 ~ 17684183 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGTGATACCCCGGATGCTGCGGGGCCCGAAGCCCAGCGCTGACCTCGGGCTCGGTCGTGTGAAGGCGTGTCGATGCAGATGAGCCTCGACTTCGTGCCCGACTCTCCGACGCAGCGCCCTGCTCACTCGGACTGCGGCTCGGCTCAGCATGCCTGCTCTATTACAGAAGCCTCCCCgtgttatttaaaaactataatcTAATTAATATAGTGGTGTTTGTTTGATGTGTAACAACTTGAAAaagatacaattatttaaaaaatcagcaTTTTCgtttattttttagaatgttaatattttaaatatatatatatatatatatatatatatatatatatatatataaatggtttaaataacttttatttgtgtatgtatcaAGCAagatagtttaaaaatacataataataataataggctacttaaaaaagtataaaatatataggctagGCTATAGAATATGTACAGCACTAATGTACGCTCAACTTCAAAAcgatttaaatatttcacagattgttttttaGCTATATAAGTTTAAAAAGCTATATATCAATACACTTTTCGTTGTGTACGTACAGACTGATTACGCAACTGAACGTCACTagtagaaaaatataatatcaatCAGTTATTAGCTGAGCTGACGGGCTGATTCACTCTCTCGACAGCAGCAGATGGTTCGTTATTAAAATCCCACTAAACACTgacgtaataataataataataataataataataataataataataataataataatgtgtgtgtgtaggttgtTGCTCCCTCTCTTATCCTCTCCCGGAGTCCTGCCAAGCGCCGGGCACCGCAGTGACTTTGAACGCCGGCACGACCGGAAGAGCGCCGGCGTGACGCAGCAGCACTTCCTGCCCCGTTC

Function

GO:

id name namespace
GO:0070546 L-phenylalanine aminotransferase activity molecular_function
GO:0080130 L-phenylalanine molecular_function
GO:0008793 aromatic-amino-acid molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171729 lncRNA downstream 18037 17663455 ~ 17664170 (-) True G136616
TU171717 lncRNA downstream 38449 17643511 ~ 17643758 (-) True G136607
TU171713 lncRNA downstream 51379 17628887 ~ 17630828 (-) True G136605
TU171682 lncRNA downstream 61020 17620139 ~ 17621187 (-) True G136578
TU171709 lncRNA downstream 72297 17609492 ~ 17609910 (-) True G136602
TU171805 lncRNA upstream 36543 17720726 ~ 17723415 (-) False G136666
TU171905 lncRNA upstream 228055 17912238 ~ 17971853 (-) True G136746
TU171911 lncRNA upstream 257289 17941472 ~ 17963244 (-) True G136750
TU172002 lncRNA upstream 428493 18112676 ~ 18112903 (-) True G136820
TU172012 lncRNA upstream 456568 18140751 ~ 18179687 (-) True G136826
AMCG00012408 mRNA downstream 33181 17647172 ~ 17649026 (-) True AMCG00012408
AMCG00012409 mRNA downstream 46346 17634857 ~ 17635861 (-) True AMCG00012409
AMCG00012400 mRNA downstream 154673 17526875 ~ 17527534 (-) True AMCG00012400
AMCG00012398 mRNA downstream 159128 17519655 ~ 17523079 (-) True AMCG00012398
AMCG00012399 mRNA downstream 171115 17507924 ~ 17511092 (-) True AMCG00012399
AMCG00012415 mRNA upstream 7558 17691741 ~ 17697285 (-) True AMCG00012415
AMCG00012416 mRNA upstream 73151 17757334 ~ 17764561 (-) True AMCG00012416
AMCG00012414 mRNA upstream 83227 17767410 ~ 17779122 (-) True AMCG00012414
AMCG00012419 mRNA upstream 98304 17782487 ~ 17795215 (-) True AMCG00012419
AMCG00012421 mRNA upstream 144824 17829007 ~ 17842851 (-) True AMCG00012421
TU171623 other downstream 178221 17503618 ~ 17503986 (-) True G136544
TU171593 other downstream 248094 17416574 ~ 17434113 (-) True AMCG00012393
TU171572 other downstream 300612 17380180 ~ 17381595 (-) True AMCG00012391
TU171426 other downstream 439380 17233928 ~ 17242827 (-) True G136408
TU171433 other downstream 467244 17213844 ~ 17214963 (-) False AMCG00012385
TU171745 other upstream 2149 17686332 ~ 17688512 (-) True G136625
TU171807 other upstream 36543 17720726 ~ 17724068 (-) True G136666
TU171825 other upstream 75796 17759979 ~ 17761454 (-) False AMCG00012416
TU171826 other upstream 83877 17768060 ~ 17770966 (-) False AMCG00012414
TU171956 other upstream 413997 18098180 ~ 18100627 (-) True AMCG00012437

Expression Profile