RNA id: TU171770


Basic Information

Item Value
RNA id TU171770
length 2946
RNA type TUCP
GC content 0.49
exon number 4
gene id G136641
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17764145 ~ 17767531 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGGGGTGTGTGTGCAGGGCGTGGGGCAGCAGTCCGGGCCGCTGCTCCGGGTGCTCGTGCCGCGCAGTGAAGAGGACCTGCTGAGCGTCAGGGTGCAGTTCCACCGCCAGCACGGCCGCTCGCTCTACTCCACCCTGCAGGAGGCTGTGAAAGGAGAGTACCAACATGCCCTGCTGGCTCTGTGTGGTGCCGAAGACATCTGAGGCCAGACAGGCAACAGCCCATAAACTGCACAATACAGACAATAAAATATACCAGCCTTTGTTTCATGActattttaaaggttttttttcgtattttattatttacatccTGTGTAAAAGGTTGACAAGTTAGTGCACACCACATACAATGTACAAAAGAGATCGAGGGAAAAACTGAGAACACAACCAAGGTGGTACAGtcagaaagaaataaaaccacagacGCACAGAGCAGAGGGAAACTGGAGAAAGGAAACGGTTCACAAGTAATATATTATAGCCTGGTACGGCACAGTCCcccagagacacagtccagacACCTCCCCCTGCCCCCAACCGTTCAGCACCAACCGTTCAGACAATTCTGCTTCCTTACCAGTTTGGTTTTGTCCCTTATTAAACACACAGCCTTTAAATCACCTGTACCATGTGACGCCGGCTACACGCTGTACTGCAGCGCTGTGAGGAAAGGTGGAAATACACGATcaaagcaacaaaaataaatctaaagcaAGTTCAAATCCCTccctgcagtaaaaaaaaataaaaaataaaaatacaatcagaccttaatacaataaaaaagcacaagaaaagtGCAGAACAGGATCGAGACATGGAGACTACAGAGCCCGAACCCAGCGCTGTGATTGGTCGAGCGAGGTGTCCGTCAGACACCCGAGTCCCCCTCCTTCCTCCCTTTGTTAGTGTCAGGATGTtatactataaaaaaaacacactagaCAGAACACAATCTTCTCATCTCTTTCTAAACAGCCGTTTCCACGTATTGTTTTCAACTCTAACCTGGATTATAAATGCCAAACACGGGGGGGGGAGACCCTGCTGGCCTGGActgtctccccctccccccccaggaccagggccAGAGACACCGGCACATCCAATCCACTCCACACTCTGCCCAGTTCGTTAATTGCTTAATGACTCGCACCGTCGCCTCCTGCCCTGCTGTCTGCGCTGCCCTGGGATTGTTATTACGGCACCTCCCCCCACACGAACACCACACACTGAGGGATGACCACAGAGCCCTGCAGCAGAGCGCgggaggaagaaggagagaggagaggaagaaaaaggggagagaaaggaggaggaggaagggggagagaggggagaggaagaagaggggaaagagtgggaaaggtgagAGATAAACAACCCTGCTGGAACCCTCAACATCCACGTCCAGGTCGCCCTGAACACGTGGGCTGACCCCACGACCCTgcgccccccccaccacacacacacacacacacacacacacacacacacacaggccataTTGCTACTAGTAGCAgctatattactttttttttcgtCTTTGTTAAGTGTTTTGATACGAGTAGGGAGCACAAAGTCACTATCtatagaaagaaaagaaagactatGTGTTGACTGGATGAATGACTGATTGGCAGGCCTGCACGCGCTTTGGCCGTGGTAAATCATTTCAGCCACAACATTCTGAGGAGGAAACAATAAAACGAAACGCAGAAGACAACGAAAAACCAACCGACCACGCAACCACAAAACTGGACTGCGACCAGCAGTCGACTAAATAATAACATCAGCATCATAATCAGAGTaatataaaagtaaacaaaatgcgACGGAAGAGGAGCAAGCCGAATCGCCACTAACCACGGGAGAGGGGCCTCCCGAGAGCCACACCGACCTggccacagcacacacacacagaaaaaatgtacaggagtattacaaacattacAAATACCAGAAAACTAGCCCCCagttgcaaaaaaaacaatagtatcagaatattaataataataataataataataataataacaacaaatacaatagtTATTCACATTATTCCAAAcgaacaagaaaagaaaagctctCTAGGTATGTACAGATATAAAATGCACTGTGGGGGGTTCCATATTCCTTTATTCGCTCCCCCCCCACTATCAGCTGTCTGTATACATCAGAAATAAACTAGGAGAcgaaaaaaaatatacaaatcgacaaaaatacaagttacagctgtttgtgtttcttgttggttttaaaaagacaaaggaTTAAAATTCTCTACTGTCCCCCCATCTCGGTCCGTTTGAGACCCCGCTCGGTCTGCGGGTAAAGGTTCTGGCGCTGTAGTGAAGCAGTCCGTCAGTCGTGTAGCGATTCACTTATTTACAGGGGTGTCGAGAAACCAGTTCCGAGACttattattgaaatgaaacGTTCTCCCATTAGAATTAAAAAGGGGTTTCCCGAAGGGGCAGGAGCGAGTCTCCGGCCGTGGCACGGATTAAAACGGGGGAGGAACTGTGCGGAGAGGGAACAGACACtgaataaaaagagagagagagtgagagagggagcaTGGACTTGTGATCCGCACTGAACTCGCAGGAGATGGGGGGACAAAAAGAGCagagaaaagaataaaaaaaatctagaacTGTTTGTGTTATAATGCTAGAAAAAGTGAGACTTActaatgctctctctctccctccactaACCTCAGTACCTTTTCTCAATGGCCAACGCCCCCTCACCCTCCTCTCCTTCCGCGGCAAAATCCCACCTCATCACGGTGACAGGTGCGGTTCCCGTCTCACGGCTTATCGGGGCCGCCGGTCTTGCGGGCAGCGATGAAGGCCATGCCGTGGGTGCGGAAGTGCGTACTGAGGTCGGCCGCCCGCTCGAAGCGCCGGCGGCACACGCGGCACGCCAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171670 lncRNA upstream 99975 17663433 ~ 17664170 (+) True G136571
TU171665 lncRNA upstream 110683 17649265 ~ 17653462 (+) False G136569
TU171663 lncRNA upstream 115038 17648628 ~ 17649107 (+) True G136568
TU171659 lncRNA upstream 128184 17623113 ~ 17635961 (+) True G136564
TU171618 lncRNA upstream 274601 17489319 ~ 17489544 (+) True G136539
TU171869 lncRNA downstream 133377 17900908 ~ 17901656 (+) True G136718
TU172036 lncRNA downstream 494366 18261897 ~ 18269507 (+) True G136842
TU172043 lncRNA downstream 527684 18295215 ~ 18317076 (+) True G136848
TU172070 lncRNA downstream 666039 18433570 ~ 18470784 (+) False G136866
TU172069 lncRNA downstream 700275 18467806 ~ 18470784 (+) True G136866
AMCG00012417 mRNA upstream 3863 17755706 ~ 17760282 (+) True AMCG00012417
AMCG00012411 mRNA upstream 12690 17730997 ~ 17751455 (+) True AMCG00012411
AMCG00012412 mRNA upstream 50835 17700146 ~ 17713310 (+) True AMCG00012412
AMCG00012413 mRNA upstream 72862 17689118 ~ 17691283 (+) True AMCG00012413
AMCG00012410 mRNA upstream 75674 17683394 ~ 17688471 (+) True AMCG00012410
AMCG00012423 mRNA downstream 24995 17792526 ~ 17795244 (+) True AMCG00012423
AMCG00012418 mRNA downstream 39028 17806559 ~ 17814564 (+) True AMCG00012418
AMCG00012428 mRNA downstream 170406 17937937 ~ 17941562 (+) True AMCG00012428
AMCG00012429 mRNA downstream 235108 18002639 ~ 18006774 (+) True AMCG00012429
AMCG00012439 mRNA downstream 362753 18130284 ~ 18134221 (+) False AMCG00012439
TU171766 other upstream 6458 17755420 ~ 17757687 (+) False AMCG00012417
TU171664 other upstream 110683 17650767 ~ 17653462 (+) True G136569
TU171661 other upstream 117240 17645641 ~ 17646905 (+) True G136566
TU171641 other upstream 216177 17547368 ~ 17547968 (+) True G136558
TU171630 other upstream 245747 17517450 ~ 17518398 (+) False AMCG00012401
TU171753 other downstream 24720 17792251 ~ 17795217 (+) False AMCG00012423
TU171793 other downstream 73402 17840933 ~ 17843921 (+) True G136658
TU171871 other downstream 135301 17902832 ~ 17903810 (+) True G136720
TU171980 other downstream 364876 18132407 ~ 18134381 (+) True AMCG00012439
TU172065 other downstream 617758 18385289 ~ 18388306 (+) True G136864

Expression Profile