RNA id: TU171793



Basic Information


Item Value
RNA id TU171793
length 733
RNA type TUCP
GC content 0.50
exon number 2
gene id G136658
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17840933 ~ 17843921 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ttttttttttttttttttgtagaatttatatgttttttatttatgggTGAGGGTACAACATTGAGTTCCCCCGTCCCACCCCCGCAACCCTGAAATAGATATAAACTTCCCAATtaattgcaaatataaaatgtagtgtGGAGAGCATCACTGGAGACCGTGACACCGTCCCCTCGGTGTATTTGTCGCTGAAGCCCACCAGTGGAGAGAGGCAGGATTTTGGCAAGTGACGTCTAGAGACTGCTGCATTGTGGGTTGACTTCTGGGAGTAATTATATGCTAGGTAAGAGTAGGGCACACACAGgttgataattataataaaataagctCGGTTATGTTAGCTCTCCTAGCGGTTGTACAGTACACTGGGACAGAGCGTGTAGGAGCAGGTATACACCGACTGTGCTGTGGCTGTCCTCTGCGTTCAGATTGGGGAAGTGTGTCGCAAAGTGTGATTTGTTTATGTGTGCCAAGAGAGGTCCAATTTGTTTACGGATTGACTATTTTTCCCCACCCCTCCTCCACAGGCTCAGATCAGAGGACACTTGTTGCGATCCGGGGAGGCAGTCGCTATGGAGACGGCCTCCAGCTTGTTGCCGTAGATGCAGCGGGCCCGTTTGTGGAGGGGCAGGCGGCAGCAGGCCCGGCGGTCCGTCCAGTCGCTCATCCTCTGGCCACAGAGGTGCTCCGGCAGCCCTTGGACCTGCAAGCACAAGCAACAGTCACTGTGGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU171670 lncRNA upstream 176763 17663433 ~ 17664170 (+) True G136571
TU171665 lncRNA upstream 187471 17649265 ~ 17653462 (+) False G136569
TU171663 lncRNA upstream 191826 17648628 ~ 17649107 (+) True G136568
TU171659 lncRNA upstream 204972 17623113 ~ 17635961 (+) True G136564
TU171618 lncRNA upstream 351389 17489319 ~ 17489544 (+) True G136539
TU171869 lncRNA downstream 56987 17900908 ~ 17901656 (+) True G136718
TU172036 lncRNA downstream 417976 18261897 ~ 18269507 (+) True G136842
TU172043 lncRNA downstream 451294 18295215 ~ 18317076 (+) True G136848
TU172070 lncRNA downstream 589649 18433570 ~ 18470784 (+) False G136866
TU172069 lncRNA downstream 623885 18467806 ~ 18470784 (+) True G136866
AMCG00012418 mRNA upstream 26369 17806559 ~ 17814564 (+) True AMCG00012418
AMCG00012423 mRNA upstream 45689 17792526 ~ 17795244 (+) True AMCG00012423
AMCG00012417 mRNA upstream 80651 17755706 ~ 17760282 (+) True AMCG00012417
AMCG00012411 mRNA upstream 89478 17730997 ~ 17751455 (+) True AMCG00012411
AMCG00012412 mRNA upstream 127623 17700146 ~ 17713310 (+) True AMCG00012412
AMCG00012428 mRNA downstream 94016 17937937 ~ 17941562 (+) True AMCG00012428
AMCG00012429 mRNA downstream 158718 18002639 ~ 18006774 (+) True AMCG00012429
AMCG00012439 mRNA downstream 286363 18130284 ~ 18134221 (+) False AMCG00012439
AMCG00012432 mRNA downstream 318655 18162576 ~ 18169744 (+) True AMCG00012432
AMCG00012431 mRNA downstream 330089 18174010 ~ 18179817 (+) True AMCG00012431
TU171753 other upstream 45716 17792251 ~ 17795217 (+) False AMCG00012423
TU171770 other upstream 73402 17764145 ~ 17767531 (+) True G136641
TU171771 other upstream 74442 17764145 ~ 17766491 (+) False G136641
TU171766 other upstream 83246 17755420 ~ 17757687 (+) False AMCG00012417
TU171664 other upstream 187471 17650767 ~ 17653462 (+) True G136569
TU171871 other downstream 58911 17902832 ~ 17903810 (+) True G136720
TU171980 other downstream 288486 18132407 ~ 18134381 (+) True AMCG00012439
TU172065 other downstream 541368 18385289 ~ 18388306 (+) True G136864
TU172158 other downstream 695624 18539545 ~ 18544490 (+) True AMCG00012460
TU172324 other downstream 1325827 19169748 ~ 19174421 (+) True G137083

Expression Profile