RNA id: TU172036


Basic Information

Item Value
RNA id TU172036
length 7587
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G136842
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18261897 ~ 18269507 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCCTTGTTCATCTTCGCGTACATGAAAGGAAAATCCGTGctaaaaatactgtaaaccaTGGTTTCTCCTTTGCATGCTCTGAAAAAGCAGCACAGCAGATCGAACAACACTAAACGGAGTCTTTTCATCACACACCAGCAGACAGGAAGGTTTATTTGCATTTcgtcttttcaatttttttttttttaaccccccaCACCCGCCATGAACAATCAAGTTATGCAAAACATcacacagactttttttttaaacttgcacGGACACCCACTGTCGCCAGGGTTTTACGGTAGTGACTGGCTGACCAAATTTAATCCGTATATCCCTTTGCAAGCTGCAGGACGACAAAAGACACGCTGACGACACACAGCCACGCAACGGCCGCAAAGAGAGCCACTCGAaccaaaaagacaacaacagtTAAGACTTGGAAGAAACACACACCACTTACTCGATACGTCTTAAAACGTTTCAGCTAAGTAAAGACCTGGGGCCAGCTTTTAAGTATTTAGGCGAGTCggtacttttttgttgtttgtttgggtttctGACCTGCGTCTTTTCCAAATTGGTGGGTTGCAATCTTTTGATTTACTCCAGGTCTTCAAAgcaggtgggagagagagacaactaTCTTATCAAGAGGGAAGACTGGTGAGACACATATACATCTTTGAAGCTTTGAAAGCCAACACTGGTTGCATAATACGTCATAAAACTGTAACTACCACATCCCCAGACTCCCTTGTTTGGATCTTGTTGCTTTTTGTTCTGGCTTTGTGCCGGTAAATCAAGCACGTTGATCTGCTTTAGCTCGGGATATTTCTGTAGGCGTCTTGCCCAATTTCTGGACCCCCTAACAGAACGAATCGCAGCTTTAAAATATCAGCTCAGATCTCGGTCTTCCTAAGAAATGCGATCTGCCAGCAGCCGACGTTCAGCTGGGAAAGAAAAGGTCGGCGCGGCTGGTTGGGTTAAGGTTTAGTCTGGTCGACTTCAAAGGGTGACTGGCACCTCTGTAAAAGTGTGGCTATTATTAAGCCAGGAAACAAATgtgcagataaaaaaataaccattttattttgcaacaagATATTAATAGATTGCGATTAAAGTTTAATTCGTCCCGGCTAGGTAAGAAGATCACAGTGCTTCGGGATGCAGCGAAAGTAGACGTCGAACGGTATCTCTCTTCAGAGCCGGTGCGTGTCAGACAGCCAGGGATTTGAGCCGGGACACCAGCCCTAAGCCAGTTAGCATCAGCTCGAAAGCAATGCCGTTGGGATGCACATGCATAAAAGCAGCCACAGGTTATTTCTAGAGTACGATAACCTCCCTGAAACCCACAAATCACAGCCTAGTCGTCTATAAAcctggattattttatttattcgcGTATATAtgcaggctttttttttcccaagatAATGGGACATCCTGCAGAAGCTCGCACACGAACCATGTGGGATTAGTTACTTTACTGCTCATATACCGAGCCGAACGGCGACATCTGGAGTGAGAGATTCTGCAGGGTCTGAAAAGCAGATCCCGATCGCGTCCACAAAATATTCCCCGTGTGTTTTAAAGCACACCAGTAGTCGAAATGAACCACAGGGGTAAAATGATCAATCCCGCACTGCCAGTGACTCTCAATGCACTAAGTGTCTTCAATGAGACAGTCATGAGTATGAGGTCAGGCATTAGGCGATACTGCCTCCCCGTCTGCGGAAAAAATCGAGTCGTGTTACACTCGGGTGTGACAATATTCTGGCGGATACGCGCTCGTGTCAAAGATTGTGGTGCCGTACAGTCTAGGAGACTAGGAGCTTTTGTTCCGGCGACTTCTCCGTCAGGATAATTCTTGACTAAATGGGACTAATCTAATCAGTGGTTCGTACAGATATCCCTCAAGTGCATCTGGGCAGAATTCCTCAGGGAAACTGTCAAAATTCGACGAGGCAAAAGCACGAATAAAAGCGGTTGACTATGTAGCAAAACGACACCCAGAGAGGGAAAAATACCAATATCAAGACTGGAATCGACACTGGCCATTGCAATTTTAACCCTTTGATCATATTAACTACAGGTGCCCTTTAAAGACGACCTTAAAAGCATCCCCCGCTTCTCTTTTGGTCATGAAGTGCTTTCAACTCACTTGTCTTGTCTCCAGTAATGGAATTTACCAAATACTTAATCGaagtagatttgtttttaatttaatttgatcctGTAATGGAGCAATCGACCCTGAATATCCAGTCTTTGATTTCTGTGCTGTCAGATCGTGTGGATGGGGGATGGGTATCACTTTGAACAACCCACAGCTTGAATTTCAATCATCAAACGCCAGATCCTGAGGTGCCAGGCGGGAATACCAAATTCAGAGATGAGTAGTTCAGGATTATCACTCTTCTCTGCCCAAATACTTAACGGCAAACACGGGGTGCAGCAAGGAtgctcaaggacattcactgaTCGAGAGAGGCTCTTGGTAAGAGAATTTCAGTTTGAAAAACACCCTCAAAGCGACGACTCTGCCCGAGGCTCAGTGTTACAGCGTGAAgaacatctatttattttatacttcttCTTAGGGTGGAGATGGCCAAAGGGTGGACAAGGTTATCTGACAATCTCAAAGTCAAGTCTTTTCCGTCATGTTTCTAGAAAAATCTGATGCTGAAACCGATTTTCTACGGTTGCTCATTCGGgccatccttaaaaaaaaaagtcaaatgtgCGTAACGTCTTGGACACAAGGTCATGTATGTCTGGAGTAATGATGTTGTTCTCCCTAATGGTTTGGACATTCACTGACACCTTATACATTCCTAGGGTGCTTTGGGAGCTGGTCAGTGACCAACTCCAGGAACAGACAGTTGCCGACATTTGTTTTAGGCGGAAATCAGGGCGTTGATCCACTCGACAGAATCAAAACGCAGTGCATACAATCAGCCGTGAAAATACTGTGGAGTGAAGTCACTTCCAGCACCTTTATCAACCAAGGCAATATATGGTTGTTCTGTGTGGGTAGCAAGACTTCAACAAATGTGTGAATTGtttgcaaatatatacacttacAAAGCTTCCAGACGGAGTAAATCAAATCACAAACCACCTCGTGTGTCAACAAAACACATGCTTTCTAGTTTGTCGAATCACTGAATGAAAGTCAACGGGGGGGTGTCTTTTCACAGCACTTTTATTCACATTAAATTCTAAATCAGCATAAATCAACCATGTGACCAATTCATTTCGAGAAGCGGGTGCAGCACCCGACCCAGACCCGCTTCAGGTTGGATGAAACGCTTTTCTCCTTTTACCCGGCATGGGGTAAAGCACCAACTCGGATCCCGTACCTCGTTTCGACATGCCAGAACGGCCGTCGGTAACTGGTGCCTTTGTGTTCCTCAAAGAGGTTCCGAACGGCCCGGTCTGAAACCCAAGCTCTTTTAAGGCTTTAAGTTACGTCTTGAGACAAACACTGCGTGAGTGAGGTCACGCACTTGACAACTGTGTTCAAagcaaagtaatacaaaatgaagataACTCAACAGATTCTAAAAGGAAGACTTGttggaaagaaaaatggaagaaaaaaataaataactccgAAACCCTCAGCCAAAACATTTCTCCGAAGGACCAAGCTGCAGACGGGCAGGGACTTTTTCGGAAATGCAGCTCCTGGCAAATACAACTCCTTTTGCCAGTTTTTGAGCGCAAGGATTCAGTTGAGGGGTTTATAGGCCTTGGCAAATCCCATCACGGAAGCGGACATGGAAACGCACCGTTAAAAACTTCGAAATAGATAATTTTGAAATAACAGTACTTCTTTTTAGTTAAAAGGGGTGTTTTCCATTTAGTGATTGCCATGAAACGTAACGAGAGTCTGTCTCTATACGAAGCAAGGGCCGTGACTTGAGTGGGTTTAGCCCTGAGAAGAGGATTTTGGCTGAAGGCGCTGTGATCATAAGCCAGGGTTTCCCAATCTTACCCATGACTAATTGGTACtgattgacttcaattaagatGCTAATGATGTAAAAGCCGAGCGCTGGGCAGCAGTGGGAAGCAGAGGATGCTGGGATTCCAATGAGGTGAGGATGGGAACGCCCTGATGCAATCAGTGCAAGATGAGTAACATCCAGACAGTGCGTTACATTTACTAAATATAAATCGGTACTGCCCCTCATCTTTGGCATAACTGTCGGCACTACCCCATTCAGAGAGCTACACTGAAATGATACGTGATCACATCGGGACCAAGGGATGGAGACCGCGGGGGTCTCTGAATGCAATTTGAAAACATAATCCCTTCTGGCACGAGATTGCCAGGGAAGCTCTCACATTCACAAAGACTGCGGGTCATTCAAGCAGCCCAAatgttagaaaaacaaataaaaatgatcattacaatacaataattattataatcagaTAAAAAAAACCACGATAACAAAgtgtcattttcaaaagcagaaaacaaataattgaaatcaGTCTCAAGATTGCCACAGCTTTTGTTCCAAAGGGGGCTGCTTAAGGCCAGACCAGAGACATACTACGAGTAAAGTAAACGTATTATGGCCTACTTACGTATCTGTGTGGATGAGGTTGGTTTTTTTAACAGTGGTACCTATttagaaacatttgttttcagtccaGATGCTGTGCATATTTTATTCACTCTCTCATCAATGCAGTTTTCTGGTACAACTGTTTGAATGTGCAACTGACAGCCTCCAAAACTCATTACGGGAAACCTTTAAGTGCAATGGAAGGAAGCAGCGAGGAAGTAAAATGACCTGATACGTGGAGAGGTGTGGGGGAGGGGAACAGCCCACCCTCGGgaaatattaatcaaatgtatattcCTTAGAGTTTGCAACACTGTGTTTGACAATAGTAACAAGCCCACGGGAATTCTACTCGCTAATTTCCCTGATGACTTCTTGACAATTAAGTGTGAGATCACGCTCATGTAATGACCCGGTCTGTCAGTGTTGGCTCTGGTTAATAACCTCCAAATTAACCCGCCTGGAGGCTTTAGGAATTCCAAGTTTAATGGAGTCGTACCTTATGTGTCGACTGTGTTACAGTGACATACTGTAAGAGGGAGAATCTGACCCCTCTGAAGACCAACACTGTGATCCAGTCAGACTTCAGTGTCATTTTCCATGActgccaacaaaaaaaaaaaccaaaaaacataaaaataagtgGATAACAAAGGATTTcccttaagaaaaacaaaaaaatgaagatcGAAACAGTTCACAGCTACCACAGTCTGTTGTCGTCACTTTGTTTGTCGTACTCTTGTGCTAAAACTCTGCGATTCACGTGACGTCTGCATCCTTCCTCTCCGTTCCCCGTGACTTTGTTCCAAAACAGGTTCCCGTGCGCTCCCAAAAGGGCCAACAATTTGAAccaacagtaaaaataataataataaaaaacaataacacaataataacactGCTTTCGTAAATGCGGAGAGACAAAACCAGCGCAATCCGAGGTCCCCCCCGCCGGTTTAGTGCAAAATCATGACTACGGACAGGAAAATGAGAGAAGATGTGCAGGCGAGAAATAGCGTATCGCTCCGCGTTGATCGTCTAGcccttgttgttgttttttgtacgCTTACAATTTTTTGGCATGTGCAGGTAAAGATTACAGTAGTTCTGTACCGGGGGCACAAGGTTGCGGGCCTCACGTACGCCATACGTGCTCGCCTCGCCGGTCGGTGCCCTTTTCCGGGGGACGCTCGGTTCCGTAACACCACGAGAGACAGAAGATCTTTGTTGGAAACGGTACTAGATTCAGCAAGCGGGGTGGTGTCGAGGTCTAGTTCTAGAGCGTTCTCCAAAAGTGCTACGACACGGTCCAAGCCCCCGACTCTGAAATCCCGCCCTCCCAAAGAAGTGGTTTAATCCATACGGACGTACTGCTTGAAATCTCCGACTGTACCCAGCTTTCGTGCGGtttcagtataaaataatacaaataatttaaaaaaaagataaacgTACCGTTTGTGAGTGTGTCTAGATTGTACGGCGTGTCTGATTTccacataaatacaaatgaatgggAACATGACAGACTGGTTTGCCTTATAATTGCACGTTCTGGCATCGCAGTATCAGAGGATTTACTCGAAGGAGGCAGAGGGGGAAGGAGTCTAGTTTCATAAGGTCACTGTCTGCTTTACAGTCGGGAACCCAATGGTTGTTGATTCGCAAACCGCGTTCTATTGACCCAAGCAAAGCTTAAATGGTTCTAAAAGAAGCGTCATCAAATTCGGTGGCAGaaatctgattttcttttcagggGTCACGTGGCTCAGATTTATTTAGGTTTCTAACTCCGGGCTGAGGGAAACACTGCGTGCTCCGGTGCCAGAAGGCGCATTCGACTGAGATTTGAACGCCACATGAAACCCAACGCTAGCCCCAACCAATCTAGAACCCTCTGGAACCCTCAGCGGGCGGAATCCCTACTCTGCCTTCCGAAAACACAAACGGGGAAAAAAGACATTCTGATCCGGCTGAAGCTGCCCGGGAGACGCtgtagagtacagtacagtgtagcgATCGGGAAGCAGGGATTAGAGGAGGAGGGAGCTTTACTTTGCACGCCTCATCATAGCAGAGAAGGGATGGGTGGCAGGGGGCGAAGGAGGAAATGGTGCCACCCTCCCTGACAGTATTGTCACTGCAATATGTTTGTCAATTATTTCCGGTTCTGACGTAATTCTGTCCCTCCCCCGGGCCTCACATCATGCTTTTCCGGTGGTGAGTCTGCTGGGGGCTCTTTAGCTTGCCCTGCGAGGGCGACAGGGGTGCGGAGGGGCTCAGGTCCATCTGCTGGTACAGCGCCCGCAGTTCTTTCACCTCCTCCAGTACCTCCCGGGCCTGGCCCCAGGTGGAGGCCGCCTCCTGCAGCAGCCGCTCCGCCTCGGCCCGGCTGCCCCCTGAGTCCTTGCCCTTGCGCTCGCGGCCCTTGACCTCGGCCAGCAGCTCCTGAGTCCTCTCCAGTCTCTGGGCGATCAGGTCCTGCAGCTGGTGGAGGGGCGGCGTGGTGGCCGGTGAGGCAGGACAGGCCCACTTGGCACGGGACTCCGAGCCAGACAGGATCTCCTCCAGCGAGGCGCAGCGGCTCTTCTCGGCCGGGCACAGTCTCTTGGCCACCTGCGGCGTGCGGGCGCCCTGGGCCTCGCCCGTCCGCTCCCAGCTGATCTCGCTCTTGCGGGGCAGGCTCTCTGACTTGCCCTCGCCTGCCCCGCCCGGCCCGGGGGGCTTGGAGCTGCTGCTTGGGGGCGCCGGTTTGTCCAGGTCCACCCGGTAGCCCTTCTCACACGCGGCCTGCGGCTCCGGCGACGAGGCATCCTCCTCCTGGATGAGGTCGAGGGTCAGCATGCCGTCCGAGGTGGAGGTGGATGCCTGCGGGCAGAACGAGGGATTAGGTAACAGAGGGGCAGGGGCAGCCCTGGTGTTGGAGAACCACAGTTCCTTCCCTCCTAACTTCCAGGTCTCCACACCGGGATCGTGAAAGAGGACAGAAGCAACCGAGGACAGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171869 lncRNA upstream 360241 17900908 ~ 17901656 (+) True G136718
TU171670 lncRNA upstream 597727 17663433 ~ 17664170 (+) True G136571
TU171665 lncRNA upstream 608435 17649265 ~ 17653462 (+) False G136569
TU171663 lncRNA upstream 612790 17648628 ~ 17649107 (+) True G136568
TU171659 lncRNA upstream 625936 17623113 ~ 17635961 (+) True G136564
TU172043 lncRNA downstream 25708 18295215 ~ 18317076 (+) True G136848
TU172070 lncRNA downstream 164063 18433570 ~ 18470784 (+) False G136866
TU172069 lncRNA downstream 198299 18467806 ~ 18470784 (+) True G136866
TU172078 lncRNA downstream 203726 18473233 ~ 18474916 (+) True G136873
TU172188 lncRNA downstream 346391 18615898 ~ 18653598 (+) True G136969
AMCG00012440 mRNA upstream 24709 18229745 ~ 18237188 (+) True AMCG00012440
AMCG00012431 mRNA upstream 82080 18174010 ~ 18179817 (+) True AMCG00012431
AMCG00012432 mRNA upstream 92153 18162576 ~ 18169744 (+) True AMCG00012432
AMCG00012439 mRNA upstream 127676 18130284 ~ 18134221 (+) False AMCG00012439
AMCG00012429 mRNA upstream 255123 18002639 ~ 18006774 (+) True AMCG00012429
AMCG00012447 mRNA downstream 60417 18329924 ~ 18350901 (+) True AMCG00012447
AMCG00012446 mRNA downstream 83504 18353011 ~ 18375993 (+) True AMCG00012446
AMCG00012454 mRNA downstream 120324 18389831 ~ 18401677 (+) True AMCG00012454
AMCG00012451 mRNA downstream 132798 18402305 ~ 18414912 (+) True AMCG00012451
AMCG00012452 mRNA downstream 147456 18416963 ~ 18442351 (+) True AMCG00012452
TU171980 other upstream 127516 18132407 ~ 18134381 (+) True AMCG00012439
TU171871 other upstream 358087 17902832 ~ 17903810 (+) True G136720
TU171793 other upstream 417976 17840933 ~ 17843921 (+) True G136658
TU171753 other upstream 466680 17792251 ~ 17795217 (+) False AMCG00012423
TU171770 other upstream 494366 17764145 ~ 17767531 (+) True G136641
TU172065 other downstream 115782 18385289 ~ 18388306 (+) True G136864
TU172158 other downstream 270038 18539545 ~ 18544490 (+) True AMCG00012460
TU172324 other downstream 900241 19169748 ~ 19174421 (+) True G137083
TU172360 other downstream 968182 19237689 ~ 19238958 (+) True G137111
TU172558 other downstream 1545418 19814925 ~ 19815617 (+) True G137252

Expression Profile