RNA id: TU172065



Basic Information


Item Value
RNA id TU172065
length 468
RNA type TUCP
GC content 0.60
exon number 2
gene id G136864
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18385289 ~ 18388306 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCTCACGTGCGACCCGCGGACCGGGCACTTACACCATCTGCTCGATGATCTGTTTGAGGTACTGGTAGTCAGCGTAGTCCCCCGAGGCCCCCAGGATGGTGTTGTCGTTGACCTTCATGATGCGTGAGATGTTACGGAAGCGCGCCAGTGACCCGTACGAGCCCAGCATGTCCGCCGCGATGATGACGCCGCCGTCGAACTTCACGCCCAGCACCGACGTCCCCGTCACCATGGGGTTTTGTGTGTCTCACGGGTCCGCATGCCGGGCTCGTCGCGCCGCTCTGGCCGGGGAAGGAATAAAACTCGCCGGGTTTCGGTCCATTCTCCCAGAAATTGAGTTTGATTCCTCTGGCGTCCATTTTGAAAACTGGCGGAAGTGACGTCGGGTCGCTTCCGTAAGATGATTGGAGGGGGGACTAAACGCAACCGGCGGCCATTTTGGGTACTGGCGGGGAAGACACGGCATTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU172043 lncRNA upstream 68213 18295215 ~ 18317076 (+) True G136848
TU172036 lncRNA upstream 115782 18261897 ~ 18269507 (+) True G136842
TU171869 lncRNA upstream 483633 17900908 ~ 17901656 (+) True G136718
TU171670 lncRNA upstream 721119 17663433 ~ 17664170 (+) True G136571
TU171665 lncRNA upstream 731827 17649265 ~ 17653462 (+) False G136569
TU172070 lncRNA downstream 45264 18433570 ~ 18470784 (+) False G136866
TU172069 lncRNA downstream 79500 18467806 ~ 18470784 (+) True G136866
TU172078 lncRNA downstream 84927 18473233 ~ 18474916 (+) True G136873
TU172188 lncRNA downstream 227592 18615898 ~ 18653598 (+) True G136969
TU172189 lncRNA downstream 227592 18615898 ~ 18637938 (+) False G136969
AMCG00012446 mRNA upstream 9296 18353011 ~ 18375993 (+) True AMCG00012446
AMCG00012447 mRNA upstream 34388 18329924 ~ 18350901 (+) True AMCG00012447
AMCG00012440 mRNA upstream 148101 18229745 ~ 18237188 (+) True AMCG00012440
AMCG00012431 mRNA upstream 205472 18174010 ~ 18179817 (+) True AMCG00012431
AMCG00012432 mRNA upstream 215545 18162576 ~ 18169744 (+) True AMCG00012432
AMCG00012454 mRNA downstream 1525 18389831 ~ 18401677 (+) True AMCG00012454
AMCG00012451 mRNA downstream 13999 18402305 ~ 18414912 (+) True AMCG00012451
AMCG00012452 mRNA downstream 28657 18416963 ~ 18442351 (+) True AMCG00012452
AMCG00012453 mRNA downstream 56805 18445111 ~ 18466585 (+) True AMCG00012453
AMCG00012457 mRNA downstream 88405 18476711 ~ 18491471 (+) True AMCG00012457
TU171980 other upstream 250908 18132407 ~ 18134381 (+) True AMCG00012439
TU171871 other upstream 481479 17902832 ~ 17903810 (+) True G136720
TU171793 other upstream 541368 17840933 ~ 17843921 (+) True G136658
TU171753 other upstream 590072 17792251 ~ 17795217 (+) False AMCG00012423
TU171770 other upstream 617758 17764145 ~ 17767531 (+) True G136641
TU172158 other downstream 151239 18539545 ~ 18544490 (+) True AMCG00012460
TU172324 other downstream 781442 19169748 ~ 19174421 (+) True G137083
TU172360 other downstream 849383 19237689 ~ 19238958 (+) True G137111
TU172558 other downstream 1426619 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 1502861 19891167 ~ 19895599 (+) False G137265

Expression Profile