RNA id: TU172069


Basic Information

Item Value
RNA id TU172069
length 2944
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G136866
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18433570 ~ 18470784 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGTGTGCTCCGTTTACACAAGGGGCATTTTCCCCACACTCTGCGAAGGATGCTCTGCACCCAGGGAGGGAGGAATTCAAAACCATGTTGTCCTGCTTTTGTCACAAGGGGTGATCTGTCAGTGTCCTCTCAAGCTTTGTATGCACTCGGCATCCCTGCGTTAATATCCAGGCCCCTTTCCAAAAGTACAGTTTGTaaagcattatattttatttaatctttttaacaattctatgtgtaaaacaaaaaataggaaaaggaacatatatattttttaaaccatagGTAGGAATTTTTGCTAAGTCCTTATACCTAACAAACCAGGAGAACGAGCTTCAGTTTGTTCAGTCTCAAACTGCCGCATAGATGTGTGACACAGAAGAAGCTTTGTCTCTTCAGAAGCAACGTCTGCCCTCGTCTCCCTCCCGCCCTGGCTGATTCCGCGTGATCCTCCACTGAGCCGGCTTTGTTCTCccggaggagagaagaaaatggTGGCGGTTTTCCTTTGTCAGGTCTCAGGCAATAAGTATTTCTCCCCCCAGAGGAAAAGTATCTTGCACTGAGATGGATCTGCACTCGGAGAGATCCCACTCGACCCCATTGGCCAGGAAAACACGCGAGAGGTTCGATCTGTGGATTCTGGATAACCGGGAATAAAGAGTTTGACTCCTCAGGAAAGCGTGTTTTCATTGGCAGTGGGTTCTTAACCTGTGGCACACATCGACTCCCTGCACTTCCTTGACGGACAAACCCAGCTCACCATACAGACGCACCCTGTGGCTTGTAACCTTAAAAATATCACTGCACGTTTTTTAAAGCGAAGATCTGACAATCCGGTTTGTAGTTGCCAAACACTGGACTCTTCCGGTACGAAACCAGCACCCCCGTTAGTGGGCGGAAAATGCGGAAATCGGTTACCATTTTACCAGAGTATCTGATTTCTCGTGCCAAGGCTTCACCATACAGCACTGCCCGTGACACGGAGTTAGTTGGTTAAACGCGAGGCCTTTAACGTGAAAGCGTCGCCAAAGACTTCAAACCCTGTCAGGCCGTAACCTCAAGACTTTCTTCGTTTTGGTTCTTTCCGAATGCCGTGTTGGGAGCGGGAGCACGTGATGGTTTACCCATACGTGACCTGGTATGAACCCACACGCCTAAACTTAAAAAGGCGATGTATGAATTCGAATTGAAAGCTCTTTTCGGTTACTTTTCCAGTTCTTGTACTTccatacttttttaaatgttacttttctACCACCTGCACTTGATCCATTCTCCAGCCTAATAAACCTCTTGCCAGTTAGTGTAAATCCACTgtgcaaaaatgaaaaccattttaattgtgatttttaaatgatttttaaataaacctgaaataaacacacacacttaaccGTTTTCATTTTCCAAGTTTTATTGAgctgacaaaattaaatacaaagcagTCTGTGCATGGGTGAACACGCATGGTGTCGGGTTTGTctagtgttgtgtgtgttaagccccgccccctcctagtgtatgtatgtttaagaacaaaataagtATTCTGAAGCATTACGGGTGTGCACTTTTCAGTAGATCTCAATGTGGGGGTTGCCAGGTGACTATGCCTCTGAAGTCTTGCCATATTATTGACTATGATGTCATATAATCAACCCCCCAATTTACTCAATGGACCCTGCTGGTGAACATTACACTTAACAATCCCCTGGAACAATTTCTGCCCTCAGCCCGAATCCCTGCCCCAGCGTGCAGTGGGAGGAGGGCTGCGCCTCCCCTTTTGGGGGGCTAAACCTTTCGTTGGCCACAAGCAGCGGCTACCCTCGTCCAGTTAGAAACACTAGACTTCGCTGGATTGACCTCTAACCTCAGAACCTTTTATTTaactgatttgatttaaaagaaGTTTAACTAAGAAAATGTTTGAGAATTCGAGGATGTTATTTCCCTACCCCCCCAAcggttttaaaatgatttcagaaAAGCTTCAATTAGAGAGAGCGGGGCCTAAAGATGTCCAAGGTGCCCCAACCAAGATCCTTGGCACAGTTCTGAACGTTTTCCCCCCAAATCTGCCCCTTTGAGCTCGAACGTGTTCAGGTAGTTTGTGATTTTATGTAACAATTGGACGTTTTCACACTGAACGCAGCTCAGGCGGGCTACTGAGAGATCNNNNNNNNNNGGAACCTGGGGATTGAAACCTTTCTTTGGCCGCGTCTTGAAGACTGATGATTTAAAGATCGGTATTGGAGGTCACTGCGACTCGACCCATTTCCAGGCAAGGCAAGTGGACTGTGGGGCAGCACTGTGGGGACGGAGGACACCGTGGGCTCCCCTGCCAGTGAGGGGCCGatcactctctctccttccctcacTGTCTATAGGTcatctctctccccttccctccctctctctctctctctcttcccactTCCCTCTCCATCTGTAGGTCATCTCTCtacccttccctccctctctctctctctctctcccccattcCCTCTCCGTCTGTAGGtcatctctctcttcctccatgCCACAGAGCCAACTCCTAAAGCTTTTGGGGGCAGGGGTCAAGGTTTGcatggggcgggggggtggtAGCAGGCACGCTACAATATGGCACAGTCCGAGTCTTCCTTCTTCTCGGCGCGTCTTCTCTCCCCGGCCTGTCTGCCCGCCGCCTGGCCCCTCACCTGGAAAAGGAAGGATGGGGTTAAATCGGAGCCGGAGAGGGGTATGTGGCGATCGCGGCCTGAGACCTAGTCCGGTGTGAGTTTGTGTGCTGTACCTGCTGCGTGGGTGGCGTGGGCTGGGGCTGctgttcctgctgctgctggtacTCCTCCTGCTGCAGCTGCCTGGCCAGCTCCAAATCGCTGAGGGGGGAGACGCcctgctgctgcagagacaTCGCCACCAGGTAGTCCTGAGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172043 lncRNA upstream 150730 18295215 ~ 18317076 (+) True G136848
TU172036 lncRNA upstream 198299 18261897 ~ 18269507 (+) True G136842
TU171869 lncRNA upstream 566150 17900908 ~ 17901656 (+) True G136718
TU171670 lncRNA upstream 803636 17663433 ~ 17664170 (+) True G136571
TU171665 lncRNA upstream 814344 17649265 ~ 17653462 (+) False G136569
TU172078 lncRNA downstream 2449 18473233 ~ 18474916 (+) True G136873
TU172188 lncRNA downstream 145114 18615898 ~ 18653598 (+) True G136969
TU172189 lncRNA downstream 145114 18615898 ~ 18637938 (+) False G136969
TU172232 lncRNA downstream 431728 18902512 ~ 18902871 (+) True G137007
TU172242 lncRNA downstream 461640 18932424 ~ 18933248 (+) True G137016
AMCG00012453 mRNA upstream 1221 18445111 ~ 18466585 (+) True AMCG00012453
AMCG00012452 mRNA upstream 25455 18416963 ~ 18442351 (+) True AMCG00012452
AMCG00012451 mRNA upstream 52894 18402305 ~ 18414912 (+) True AMCG00012451
AMCG00012454 mRNA upstream 66129 18389831 ~ 18401677 (+) True AMCG00012454
AMCG00012446 mRNA upstream 91813 18353011 ~ 18375993 (+) True AMCG00012446
AMCG00012457 mRNA downstream 5927 18476711 ~ 18491471 (+) True AMCG00012457
AMCG00012456 mRNA downstream 22800 18493584 ~ 18512606 (+) True AMCG00012456
AMCG00012460 mRNA downstream 70633 18541417 ~ 18543186 (+) False AMCG00012460
AMCG00012458 mRNA downstream 74794 18545578 ~ 18552814 (+) True AMCG00012458
AMCG00012466 mRNA downstream 425630 18896414 ~ 18908734 (+) True AMCG00012466
TU172065 other upstream 79500 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 333425 18132407 ~ 18134381 (+) True AMCG00012439
TU171871 other upstream 563996 17902832 ~ 17903810 (+) True G136720
TU171793 other upstream 623885 17840933 ~ 17843921 (+) True G136658
TU171753 other upstream 672589 17792251 ~ 17795217 (+) False AMCG00012423
TU172158 other downstream 68761 18539545 ~ 18544490 (+) True AMCG00012460
TU172324 other downstream 698964 19169748 ~ 19174421 (+) True G137083
TU172360 other downstream 766905 19237689 ~ 19238958 (+) True G137111
TU172558 other downstream 1344141 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 1420383 19891167 ~ 19895599 (+) False G137265

Expression Profile